Wall clock time and date at job start Mon Mar 30 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99930 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00184 * 3 2 1 6 6 H 1.48496 * 109.46865 * 150.00412 * 3 2 1 7 7 C 1.37882 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99994 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.97909 * 62.64598 * 9 7 2 11 11 C 1.54845 * 111.07786 * 186.73603 * 9 7 2 12 12 N 1.47601 * 101.89778 * 141.22458 * 11 9 7 13 13 C 1.28637 * 108.54728 * 345.04976 * 12 11 9 14 14 C 1.50699 * 122.94116 * 179.58617 * 13 12 11 15 15 C 1.50699 * 109.46799 * 0.02562 * 14 13 12 16 16 C 1.38243 * 119.98430 * 269.71856 * 15 14 13 17 17 C 1.38217 * 120.01250 * 179.72761 * 16 15 14 18 18 C 1.38353 * 119.98579 * 0.55402 * 17 16 15 19 19 Cl 1.73598 * 120.01034 * 179.74979 * 18 17 16 20 20 C 1.38353 * 119.97159 * 359.72120 * 18 17 16 21 21 C 1.38217 * 119.98759 * 0.02562 * 20 18 17 22 22 O 1.34596 * 114.12228 * 359.59235 * 13 12 11 23 23 H 0.97006 * 119.99560 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.94824 * 259.37637 * 11 9 7 25 25 H 1.09000 * 110.94443 * 23.07611 * 11 9 7 26 26 H 1.09002 * 109.46621 * 120.00257 * 14 13 12 27 27 H 1.09002 * 109.47250 * 240.00064 * 14 13 12 28 28 H 1.08002 * 119.99498 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.00348 * 180.27606 * 17 16 15 30 30 H 1.08003 * 120.00274 * 179.97438 * 20 18 17 31 31 H 1.08000 * 119.99037 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6505 -2.6031 -0.9043 11 6 2.2151 -3.6990 0.1683 12 7 1.4394 -4.5906 1.0525 13 6 0.4722 -3.9164 1.5669 14 6 -0.5313 -4.5175 2.5170 15 6 -0.2055 -5.9722 2.7375 16 6 -0.7595 -6.9365 1.9163 17 6 -0.4566 -8.2704 2.1145 18 6 0.3922 -8.6415 3.1421 19 17 0.7679 -10.3173 3.3957 20 6 0.9418 -7.6764 3.9672 21 6 0.6423 -6.3424 3.7647 22 8 0.4347 -2.6271 1.1822 23 1 -0.4850 0.8401 0.0004 24 1 2.4134 -4.1775 -0.7907 25 1 3.1440 -3.3881 0.6464 26 1 -0.4924 -3.9883 3.4691 27 1 -1.5316 -4.4290 2.0928 28 1 -1.4253 -6.6471 1.1167 29 1 -0.8859 -9.0233 1.4701 30 1 1.6041 -7.9656 4.7698 31 1 1.0716 -5.5890 4.4085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260721519.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:03 Heat of formation + Delta-G solvation = -2.561511 kcal Electronic energy + Delta-G solvation = -16938.084974 eV Core-core repulsion = 14017.624673 eV Total energy + Delta-G solvation = -2920.460301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94185 -39.08186 -36.52215 -33.60820 -32.62942 -31.99112 -30.99357 -29.27225 -26.91372 -24.42037 -22.77659 -21.78915 -21.17645 -19.02874 -16.99164 -16.87270 -15.62770 -15.43779 -15.31755 -14.91057 -14.64936 -13.66867 -13.48154 -13.39289 -13.33792 -12.65047 -12.27318 -11.87669 -11.76540 -11.46926 -11.38491 -11.21501 -11.08218 -10.96796 -10.78019 -10.65360 -9.98186 -9.57973 -8.95909 -8.94493 -8.78024 -8.46557 -7.84176 -6.25397 -4.41238 1.21162 1.39470 2.13800 3.08135 3.19172 3.26170 3.29974 3.65193 4.24687 4.45661 4.78820 4.81491 4.93390 5.10368 5.34440 5.40681 5.45188 5.69757 5.74751 5.89817 6.02674 6.11923 6.27458 6.28414 6.30963 6.50156 6.65919 6.78697 6.89796 7.29722 7.52939 7.65432 8.00782 8.62171 8.93035 9.31998 10.81995 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.052736 B = 0.003757 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.823272 B = 7451.230055 C = 7558.424084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.185 3.815 10 H 0.048 0.952 11 C -0.002 4.002 12 N -0.567 5.567 13 C 0.285 3.715 14 C -0.012 4.012 15 C -0.046 4.046 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.039 4.039 19 Cl -0.084 7.084 20 C -0.110 4.110 21 C -0.089 4.089 22 O -0.325 6.325 23 H 0.266 0.734 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -13.721 6.616 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.131 3.869 10 H 0.065 0.935 11 C -0.131 4.131 12 N -0.308 5.308 13 C 0.060 3.940 14 C -0.050 4.050 15 C -0.046 4.046 16 C -0.109 4.109 17 C -0.129 4.129 18 C -0.066 4.066 19 Cl -0.056 7.056 20 C -0.129 4.129 21 C -0.108 4.108 22 O -0.226 6.226 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.260 -14.331 6.660 15.964 hybrid contribution 0.515 1.514 -0.328 1.632 sum -1.746 -12.817 6.332 14.402 Atomic orbital electron populations 1.70024 1.06204 1.27309 1.45933 1.25149 0.94921 0.99812 0.93039 0.86454 0.79946 0.82426 0.78410 1.20190 1.20813 1.19513 1.20997 0.92933 0.89189 1.54252 0.91100 1.21706 0.87098 0.94672 0.83470 0.93485 1.23993 0.99231 0.92768 0.97109 1.74603 1.07858 1.31306 1.17013 1.25184 0.92485 0.83799 0.92582 1.19162 0.96695 0.90775 0.98368 1.19526 0.96025 0.94375 0.94681 1.20947 0.99786 0.91637 0.98489 1.20934 0.98182 0.96689 0.97096 1.20853 1.01671 0.84616 0.99417 1.98347 1.93765 1.17059 1.96384 1.20938 1.00288 0.92135 0.99546 1.20945 0.96766 0.95186 0.97856 1.87392 1.68500 1.22178 1.44545 0.92430 0.90838 0.90712 0.88130 0.88046 0.85266 0.85301 0.85305 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 12.96 55.43 0.72 -23.84 16 2 C 0.08 2.14 5.43 -17.82 -0.10 2.05 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.77 8.83 -34.44 -0.30 -15.07 16 8 H 0.07 1.89 7.67 -52.49 -0.40 1.49 16 9 C 0.18 4.80 3.58 -26.91 -0.10 4.70 16 10 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 11 C 0.00 -0.04 7.68 -2.47 -0.02 -0.06 16 12 N -0.57 -12.19 10.78 -56.99 -0.61 -12.81 16 13 C 0.29 5.96 7.68 -13.62 -0.10 5.85 16 14 C -0.01 -0.18 5.97 -29.04 -0.17 -0.36 16 15 C -0.05 -0.64 4.44 -104.62 -0.46 -1.11 16 16 C -0.09 -1.18 9.70 -39.59 -0.38 -1.57 16 17 C -0.11 -1.36 9.83 -39.55 -0.39 -1.74 16 18 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 20 C -0.11 -1.36 9.83 -39.55 -0.39 -1.75 16 21 C -0.09 -1.17 9.70 -39.59 -0.38 -1.56 16 22 O -0.32 -8.31 10.46 -15.57 -0.16 -8.47 16 23 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 24 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.07 1.71 7.81 -51.93 -0.41 1.30 16 26 H 0.10 1.36 8.08 -51.93 -0.42 0.94 16 27 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 291.49 15.07 4.39 4.39 Total: -1.00 -30.35 291.49 -8.56 -38.91 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.32 Total: -0.02 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.05 Total: -11.34 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.10 Total: -36.65 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.16 Total: -8.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.35 -8.56 -38.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721519.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.347 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds