Wall clock time and date at job start Mon Mar 30 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99930 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00184 * 3 2 1 6 6 H 1.48496 * 109.46865 * 150.00412 * 3 2 1 7 7 C 1.37882 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99994 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.97909 * 62.64598 * 9 7 2 11 11 C 1.54845 * 111.07786 * 186.73603 * 9 7 2 12 12 N 1.47601 * 101.89778 * 141.22458 * 11 9 7 13 13 C 1.28637 * 108.54728 * 345.04976 * 12 11 9 14 14 C 1.50699 * 122.94116 * 179.58617 * 13 12 11 15 15 C 1.50699 * 109.46799 * 0.02562 * 14 13 12 16 16 C 1.38243 * 119.98430 * 269.71856 * 15 14 13 17 17 C 1.38217 * 120.01250 * 179.72761 * 16 15 14 18 18 C 1.38353 * 119.98579 * 0.55402 * 17 16 15 19 19 Cl 1.73598 * 120.01034 * 179.74979 * 18 17 16 20 20 C 1.38353 * 119.97159 * 359.72120 * 18 17 16 21 21 C 1.38217 * 119.98759 * 0.02562 * 20 18 17 22 22 O 1.34596 * 114.12228 * 359.59235 * 13 12 11 23 23 H 0.97006 * 119.99560 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.94824 * 259.37637 * 11 9 7 25 25 H 1.09000 * 110.94443 * 23.07611 * 11 9 7 26 26 H 1.09002 * 109.46621 * 120.00257 * 14 13 12 27 27 H 1.09002 * 109.47250 * 240.00064 * 14 13 12 28 28 H 1.08002 * 119.99498 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.00348 * 180.27606 * 17 16 15 30 30 H 1.08003 * 120.00274 * 179.97438 * 20 18 17 31 31 H 1.08000 * 119.99037 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6505 -2.6031 -0.9043 11 6 2.2151 -3.6990 0.1683 12 7 1.4394 -4.5906 1.0525 13 6 0.4722 -3.9164 1.5669 14 6 -0.5313 -4.5175 2.5170 15 6 -0.2055 -5.9722 2.7375 16 6 -0.7595 -6.9365 1.9163 17 6 -0.4566 -8.2704 2.1145 18 6 0.3922 -8.6415 3.1421 19 17 0.7679 -10.3173 3.3957 20 6 0.9418 -7.6764 3.9672 21 6 0.6423 -6.3424 3.7647 22 8 0.4347 -2.6271 1.1822 23 1 -0.4850 0.8401 0.0004 24 1 2.4134 -4.1775 -0.7907 25 1 3.1440 -3.3881 0.6464 26 1 -0.4924 -3.9883 3.4691 27 1 -1.5316 -4.4290 2.0928 28 1 -1.4253 -6.6471 1.1167 29 1 -0.8859 -9.0233 1.4701 30 1 1.6041 -7.9656 4.7698 31 1 1.0716 -5.5890 4.4085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260721519.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:02 Heat of formation + Delta-G solvation = -22.285417 kcal Electronic energy + Delta-G solvation = -16938.940267 eV Core-core repulsion = 14017.624673 eV Total energy + Delta-G solvation = -2921.315594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.65596 -40.18495 -37.46341 -35.28021 -34.38948 -33.65299 -31.95319 -30.94250 -28.35609 -26.26024 -23.74221 -23.26815 -22.77230 -20.60831 -18.92283 -17.97958 -17.19292 -17.03716 -16.69410 -16.42874 -16.10089 -15.34270 -14.56530 -14.44909 -14.38292 -14.19088 -13.83853 -13.63162 -13.50440 -12.99360 -12.82309 -12.50882 -12.37543 -12.33309 -12.23565 -11.85305 -11.71191 -11.49911 -10.83320 -10.77572 -9.91379 -9.69875 -9.49116 -8.31601 -6.56109 0.19660 0.42913 1.19654 1.38883 1.39622 1.43220 1.52472 2.32969 2.50969 2.87950 3.26060 3.42765 3.85829 3.92581 4.02648 4.18626 4.29937 4.43329 4.44693 4.65249 4.69262 4.69794 4.78536 5.01828 5.07456 5.27051 5.31399 5.34180 5.55660 5.64464 5.73543 5.90288 6.03570 6.55792 7.11097 7.23543 8.76768 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.052736 B = 0.003757 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.823272 B = 7451.230055 C = 7558.424084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.562 4.562 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.021 0.979 11 C 0.005 3.995 12 N -0.567 5.567 13 C 0.282 3.718 14 C -0.007 4.007 15 C -0.061 4.061 16 C -0.097 4.097 17 C -0.114 4.114 18 C -0.045 4.045 19 Cl -0.074 7.074 20 C -0.113 4.113 21 C -0.096 4.096 22 O -0.352 6.352 23 H 0.269 0.731 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -14.208 7.334 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.599 4.599 8 H 0.091 0.909 9 C 0.124 3.876 10 H 0.039 0.961 11 C -0.124 4.124 12 N -0.306 5.306 13 C 0.057 3.943 14 C -0.045 4.045 15 C -0.061 4.061 16 C -0.116 4.116 17 C -0.132 4.132 18 C -0.072 4.072 19 Cl -0.045 7.045 20 C -0.132 4.132 21 C -0.114 4.114 22 O -0.255 6.255 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.864 -14.847 7.378 16.684 hybrid contribution 0.366 1.537 -0.535 1.668 sum -1.498 -13.310 6.843 15.041 Atomic orbital electron populations 1.70135 1.07764 1.28392 1.46822 1.26038 0.95786 1.03478 0.92324 0.85347 0.78558 0.77657 0.78851 1.19129 1.20301 1.18938 1.21332 0.93314 0.90381 1.54844 0.90916 1.21559 0.87402 0.95716 0.82919 0.96137 1.23900 0.98520 0.91888 0.98118 1.74611 1.08196 1.30686 1.17157 1.26128 0.93208 0.82173 0.92820 1.19344 0.95765 0.91549 0.97816 1.19492 0.97265 0.93613 0.95744 1.21122 0.99931 0.91939 0.98571 1.21155 0.97989 0.96804 0.97256 1.21034 1.01503 0.85267 0.99395 1.98351 1.93671 1.16200 1.96327 1.21160 1.00316 0.91796 0.99930 1.21120 0.96574 0.95902 0.97848 1.87309 1.68746 1.24940 1.44481 0.92164 0.89492 0.90987 0.86355 0.86389 0.84431 0.83570 0.83559 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.81 12.96 21.45 0.28 -51.53 16 2 C 0.03 1.53 5.43 84.66 0.46 1.99 16 3 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.56 -31.30 8.83 25.60 0.23 -31.07 16 8 H 0.07 3.90 7.67 -2.91 -0.02 3.88 16 9 C 0.18 9.48 3.58 30.48 0.11 9.59 16 10 H 0.02 1.18 8.14 -2.38 -0.02 1.17 16 11 C 0.01 0.24 7.68 86.80 0.67 0.90 16 12 N -0.57 -24.06 10.78 -449.44 -4.85 -28.90 16 13 C 0.28 11.67 7.68 88.58 0.68 12.35 16 14 C -0.01 -0.21 5.97 29.10 0.17 -0.03 16 15 C -0.06 -1.61 4.44 -19.86 -0.09 -1.70 16 16 C -0.10 -2.40 9.70 22.27 0.22 -2.18 16 17 C -0.11 -2.58 9.83 22.29 0.22 -2.36 16 18 C -0.05 -1.05 6.32 22.32 0.14 -0.90 16 19 Cl -0.07 -1.53 28.96 -2.72 -0.08 -1.61 16 20 C -0.11 -2.57 9.83 22.29 0.22 -2.35 16 21 C -0.10 -2.37 9.70 22.26 0.22 -2.15 16 22 O -0.35 -18.27 10.46 -78.61 -0.82 -19.09 16 23 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 24 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 25 H 0.07 3.28 7.81 -2.39 -0.02 3.27 16 26 H 0.12 3.03 8.08 -2.39 -0.02 3.01 16 27 H 0.12 3.04 8.08 -2.39 -0.02 3.02 16 28 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -64.41 291.49 0.93 -63.48 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.14 Total: 11.27 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 3.24 Total: -17.93 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -4.57 Total: -80.43 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.82 Total: -19.09 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -64.41 0.93 -63.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721519.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.194 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds