Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47010 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.46902 * 29.99695 * 3 2 1 6 6 H 1.48500 * 109.46912 * 149.99847 * 3 2 1 7 7 C 1.40218 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.41253 * 119.99706 * 0.02562 * 7 2 1 10 10 N 1.30633 * 123.22099 * 180.02562 * 9 7 2 11 11 C 1.47585 * 108.33912 * 179.39187 * 10 9 7 12 12 H 1.09006 * 110.90532 * 103.24500 * 11 10 9 13 13 C 1.53002 * 110.90735 * 226.81015 * 11 10 9 14 14 C 1.50700 * 109.46823 * 293.54469 * 13 11 10 15 15 C 1.38240 * 120.00498 * 265.27471 * 14 13 11 16 16 C 1.38219 * 120.01161 * 180.26174 * 15 14 13 17 17 C 1.38272 * 120.02538 * 359.44036 * 16 15 14 18 18 C 1.38194 * 120.01253 * 0.30649 * 17 16 15 19 19 C 1.38321 * 120.00717 * 85.00072 * 14 13 11 20 20 Cl 1.73599 * 120.01374 * 0.04072 * 19 14 13 21 21 C 1.54788 * 102.10616 * 345.01047 * 11 10 9 22 22 O 1.35194 * 123.22689 * 0.02562 * 9 7 2 23 23 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46884 * 173.54493 * 13 11 10 25 25 H 1.08997 * 109.46881 * 53.54256 * 13 11 10 26 26 H 1.08002 * 119.99687 * 359.97438 * 15 14 13 27 27 H 1.08002 * 119.99072 * 179.72631 * 16 15 14 28 28 H 1.08001 * 119.99055 * 180.27778 * 17 16 15 29 29 H 1.07993 * 120.00574 * 179.97438 * 18 17 16 30 30 H 1.09007 * 111.01988 * 141.72171 * 21 11 10 31 31 H 1.08997 * 111.01929 * 265.61271 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4876 2.0464 -1.4000 5 1 1.4374 2.6527 0.7000 6 1 3.5376 1.4402 0.7001 7 6 2.0071 -1.2143 0.0005 8 1 3.0872 -1.2143 0.0010 9 6 1.3008 -2.4376 0.0005 10 7 1.8894 -3.6038 0.0015 11 6 0.8480 -4.6495 0.0161 12 1 0.7302 -5.0949 -0.9719 13 6 1.1649 -5.7212 1.0610 14 6 2.4077 -6.4692 0.6524 15 6 2.3013 -7.6521 -0.0551 16 6 3.4410 -8.3411 -0.4253 17 6 4.6882 -7.8417 -0.0983 18 6 4.7959 -6.6566 0.6043 19 6 3.6551 -5.9694 0.9801 20 17 3.7895 -4.4809 1.8632 21 6 -0.4135 -3.8458 0.4143 22 8 -0.0490 -2.5136 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 0.3290 -6.4171 1.1328 25 1 1.3277 -5.2477 2.0292 26 1 1.3275 -8.0404 -0.3145 27 1 3.3574 -9.2675 -0.9741 28 1 5.5784 -8.3783 -0.3918 29 1 5.7701 -6.2669 0.8599 30 1 -1.2898 -4.1987 -0.1296 31 1 -0.5803 -3.8879 1.4906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260734641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = -4.898283 kcal Electronic energy + Delta-G solvation = -17501.918093 eV Core-core repulsion = 14581.356462 eV Total energy + Delta-G solvation = -2920.561631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42113 -38.67496 -35.56282 -33.87158 -33.14639 -30.86695 -30.30108 -29.34712 -26.27583 -25.05690 -22.31017 -21.50933 -20.49739 -19.25267 -17.17986 -16.59722 -15.59657 -15.10211 -14.97305 -14.69199 -14.18264 -13.56939 -13.44961 -13.06185 -12.92645 -12.54203 -11.91775 -11.49482 -11.35003 -11.22844 -11.06988 -10.85700 -10.80097 -10.65862 -10.42597 -10.22214 -10.03526 -9.79802 -9.13531 -8.52777 -8.17122 -7.91464 -7.40292 -6.68696 -4.64433 1.57772 1.61257 2.96396 3.01370 3.11775 3.17297 3.94318 3.97727 4.04206 5.00378 5.10472 5.14295 5.22612 5.35476 5.52859 5.65344 5.80315 5.95246 6.02115 6.05645 6.13083 6.21695 6.34076 6.37087 6.57481 6.68346 6.78633 6.94781 7.14009 7.16509 7.21849 7.87279 8.36490 8.70252 8.95930 10.03856 10.33310 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.006120 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.314843 B = 4574.009230 C = 5199.897288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.079 3.921 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.100 0.900 9 C 0.410 3.590 10 N -0.666 5.666 11 C 0.050 3.950 12 H 0.051 0.949 13 C -0.066 4.066 14 C -0.049 4.049 15 C -0.115 4.115 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.002 4.002 20 Cl -0.036 7.036 21 C 0.016 3.984 22 O -0.315 6.315 23 H 0.279 0.721 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -10.485 1.828 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.117 0.883 9 C 0.212 3.788 10 N -0.417 5.417 11 C -0.062 4.062 12 H 0.069 0.931 13 C -0.104 4.104 14 C -0.050 4.050 15 C -0.134 4.134 16 C -0.146 4.146 17 C -0.141 4.141 18 C -0.140 4.140 19 C -0.029 4.029 20 Cl -0.006 7.006 21 C -0.062 4.062 22 O -0.220 6.220 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.940 -10.504 1.851 11.371 hybrid contribution -0.582 0.813 -0.020 1.000 sum 3.358 -9.692 1.831 10.419 Atomic orbital electron populations 1.69756 1.07407 1.29015 1.34469 1.26045 0.94864 1.01578 0.91829 0.86145 0.80312 0.80027 0.79246 1.19328 1.20273 1.18385 1.18781 0.94417 0.86310 1.49026 0.88253 1.21935 0.78253 0.94166 0.84471 1.75803 1.23483 0.95891 1.46557 1.22994 0.91487 0.96035 0.95725 0.93066 1.20644 0.93205 0.96479 1.00080 1.19699 0.94327 0.94147 0.96850 1.20960 0.98638 0.94888 0.98885 1.21044 0.92600 1.00074 1.00913 1.20945 0.97514 0.96123 0.99545 1.21019 0.97507 0.95627 0.99866 1.20821 0.93936 0.89494 0.98692 1.98400 1.98034 1.31401 1.72773 1.24239 0.98490 0.84725 0.98780 1.87357 1.23914 1.28756 1.81931 0.91029 0.92081 0.90640 0.85990 0.86312 0.86061 0.85672 0.90750 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 11.82 55.56 0.66 -20.29 16 2 C 0.08 2.04 5.50 -17.33 -0.10 1.95 16 3 Si 0.92 19.17 29.56 -169.99 -5.03 14.14 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.45 -12.37 9.47 -37.69 -0.36 -12.72 16 8 H 0.10 2.70 7.85 -52.48 -0.41 2.29 16 9 C 0.41 11.39 7.38 -16.92 -0.12 11.26 16 10 N -0.67 -17.03 8.69 -53.13 -0.46 -17.49 16 11 C 0.05 1.08 3.74 -66.39 -0.25 0.83 16 12 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.07 -1.21 4.68 -27.88 -0.13 -1.34 16 14 C -0.05 -0.87 5.05 -104.59 -0.53 -1.40 16 15 C -0.12 -1.72 9.68 -39.59 -0.38 -2.11 16 16 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 17 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 18 C -0.12 -1.89 9.83 -39.55 -0.39 -2.28 16 19 C 0.00 -0.04 6.08 -39.50 -0.24 -0.28 16 20 Cl -0.04 -0.71 25.11 -51.86 -1.30 -2.01 16 21 C 0.02 0.36 7.70 38.10 0.29 0.65 16 22 O -0.31 -8.61 9.19 -17.28 -0.16 -8.77 16 23 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 24 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 25 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 26 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -29.86 282.64 -8.31 -38.17 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.28 Total: 1.58 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.00 Total: -9.59 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.19 Total: -37.78 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.16 Total: -8.77 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.30 Total: -2.01 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.86 -8.31 -38.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.271 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds