Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47010 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.46902 * 29.99695 * 3 2 1 6 6 H 1.48500 * 109.46912 * 149.99847 * 3 2 1 7 7 C 1.40218 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.41253 * 119.99706 * 0.02562 * 7 2 1 10 10 N 1.30633 * 123.22099 * 180.02562 * 9 7 2 11 11 C 1.47585 * 108.33912 * 179.39187 * 10 9 7 12 12 H 1.09006 * 110.90532 * 103.24500 * 11 10 9 13 13 C 1.53002 * 110.90735 * 226.81015 * 11 10 9 14 14 C 1.50700 * 109.46823 * 293.54469 * 13 11 10 15 15 C 1.38240 * 120.00498 * 265.27471 * 14 13 11 16 16 C 1.38219 * 120.01161 * 180.26174 * 15 14 13 17 17 C 1.38272 * 120.02538 * 359.44036 * 16 15 14 18 18 C 1.38194 * 120.01253 * 0.30649 * 17 16 15 19 19 C 1.38321 * 120.00717 * 85.00072 * 14 13 11 20 20 Cl 1.73599 * 120.01374 * 0.04072 * 19 14 13 21 21 C 1.54788 * 102.10616 * 345.01047 * 11 10 9 22 22 O 1.35194 * 123.22689 * 0.02562 * 9 7 2 23 23 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46884 * 173.54493 * 13 11 10 25 25 H 1.08997 * 109.46881 * 53.54256 * 13 11 10 26 26 H 1.08002 * 119.99687 * 359.97438 * 15 14 13 27 27 H 1.08002 * 119.99072 * 179.72631 * 16 15 14 28 28 H 1.08001 * 119.99055 * 180.27778 * 17 16 15 29 29 H 1.07993 * 120.00574 * 179.97438 * 18 17 16 30 30 H 1.09007 * 111.01988 * 141.72171 * 21 11 10 31 31 H 1.08997 * 111.01929 * 265.61271 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4876 2.0464 -1.4000 5 1 1.4374 2.6527 0.7000 6 1 3.5376 1.4402 0.7001 7 6 2.0071 -1.2143 0.0005 8 1 3.0872 -1.2143 0.0010 9 6 1.3008 -2.4376 0.0005 10 7 1.8894 -3.6038 0.0015 11 6 0.8480 -4.6495 0.0161 12 1 0.7302 -5.0949 -0.9719 13 6 1.1649 -5.7212 1.0610 14 6 2.4077 -6.4692 0.6524 15 6 2.3013 -7.6521 -0.0551 16 6 3.4410 -8.3411 -0.4253 17 6 4.6882 -7.8417 -0.0983 18 6 4.7959 -6.6566 0.6043 19 6 3.6551 -5.9694 0.9801 20 17 3.7895 -4.4809 1.8632 21 6 -0.4135 -3.8458 0.4143 22 8 -0.0490 -2.5136 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 0.3290 -6.4171 1.1328 25 1 1.3277 -5.2477 2.0292 26 1 1.3275 -8.0404 -0.3145 27 1 3.3574 -9.2675 -0.9741 28 1 5.5784 -8.3783 -0.3918 29 1 5.7701 -6.2669 0.8599 30 1 -1.2898 -4.1987 -0.1296 31 1 -0.5803 -3.8879 1.4906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260734641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = -24.135431 kcal Electronic energy + Delta-G solvation = -17502.752279 eV Core-core repulsion = 14581.356462 eV Total energy + Delta-G solvation = -2921.395816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17224 -40.03480 -36.95753 -35.61941 -34.90607 -32.62534 -31.50505 -30.99329 -28.06361 -26.69848 -23.48364 -22.97954 -22.18990 -21.01825 -19.17258 -17.79482 -17.18700 -16.97455 -16.25152 -16.09088 -15.93310 -15.41567 -14.62829 -14.47839 -14.31768 -14.14954 -13.46036 -13.10684 -13.01258 -12.77830 -12.59341 -12.53232 -12.35919 -12.10058 -12.02905 -11.86921 -11.73309 -11.24579 -11.03844 -9.92973 -9.71924 -9.50517 -9.21792 -8.62151 -6.69058 0.39483 0.43946 1.33806 1.40936 1.56125 1.62251 2.07369 2.23564 2.81787 3.20505 3.43659 3.76708 3.95055 4.12917 4.24423 4.29705 4.39635 4.48265 4.49529 4.57837 4.69760 4.77577 4.89724 5.10373 5.23473 5.25197 5.31013 5.44925 5.56272 5.67425 5.90613 6.04233 6.31488 6.70903 6.92737 8.05450 8.41222 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.006120 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.314843 B = 4574.009230 C = 5199.897288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.090 0.910 9 C 0.385 3.615 10 N -0.671 5.671 11 C 0.049 3.951 12 H 0.050 0.950 13 C -0.056 4.056 14 C -0.078 4.078 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.133 4.133 19 C -0.031 4.031 20 Cl -0.069 7.069 21 C 0.012 3.988 22 O -0.345 6.345 23 H 0.288 0.712 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.146 0.854 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -12.002 1.060 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.109 0.891 9 C 0.185 3.815 10 N -0.421 5.421 11 C -0.063 4.063 12 H 0.068 0.932 13 C -0.094 4.094 14 C -0.078 4.078 15 C -0.135 4.135 16 C -0.139 4.139 17 C -0.133 4.133 18 C -0.152 4.152 19 C -0.057 4.057 20 Cl -0.040 7.040 21 C -0.066 4.066 22 O -0.250 6.250 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.121 0.879 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.389 -12.061 1.086 12.881 hybrid contribution -0.723 1.059 0.173 1.293 sum 3.667 -11.002 1.259 11.665 Atomic orbital electron populations 1.69816 1.08940 1.30571 1.34739 1.26946 0.95697 1.04837 0.90608 0.85017 0.78752 0.75090 0.79677 1.18359 1.18770 1.18296 1.19021 0.94318 0.87742 1.50988 0.89149 1.22243 0.78719 0.94955 0.85583 1.75741 1.25070 0.96304 1.45015 1.23067 0.90388 0.95976 0.96827 0.93224 1.20508 0.95153 0.95977 0.97768 1.19795 0.93567 0.95689 0.98798 1.21292 1.00626 0.93818 0.97801 1.21527 0.91756 1.00877 0.99707 1.21408 0.99256 0.94976 0.97676 1.21279 0.97181 0.96504 1.00246 1.21102 0.95425 0.89042 1.00181 1.98380 1.98131 1.33672 1.73782 1.24481 0.99612 0.82920 0.99584 1.87289 1.23903 1.31483 1.82328 0.90131 0.88849 0.92536 0.83659 0.82471 0.82472 0.84753 0.87947 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.44 11.82 21.87 0.26 -44.19 16 2 C 0.04 1.99 5.50 85.36 0.47 2.46 16 3 Si 1.00 39.58 29.56 68.60 2.03 41.61 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.48 -27.63 9.47 23.49 0.22 -27.41 16 8 H 0.09 5.14 7.85 -2.91 -0.02 5.12 16 9 C 0.38 22.09 7.38 85.61 0.63 22.72 16 10 N -0.67 -35.21 8.69 -435.95 -3.79 -39.00 16 11 C 0.05 2.14 3.74 45.39 0.17 2.31 16 12 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 13 C -0.06 -2.03 4.68 29.85 0.14 -1.89 16 14 C -0.08 -2.66 5.05 -19.84 -0.10 -2.76 16 15 C -0.12 -3.15 9.68 22.27 0.22 -2.94 16 16 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 17 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 18 C -0.13 -3.97 9.83 22.29 0.22 -3.75 16 19 C -0.03 -1.12 6.08 22.32 0.14 -0.98 16 20 Cl -0.07 -2.84 25.11 -2.72 -0.07 -2.91 16 21 C 0.01 0.52 7.70 72.59 0.56 1.08 16 22 O -0.34 -19.34 9.19 -84.74 -0.78 -20.12 16 23 H 0.29 14.12 8.29 -92.71 -0.77 13.35 16 24 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 25 H 0.06 2.23 7.12 -2.39 -0.02 2.21 16 26 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 27 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 28 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 31 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 Total: -1.00 -67.02 282.64 1.90 -65.12 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.14 Total: 15.59 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.11 Total: -16.10 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.53 Total: -83.19 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.78 Total: -20.12 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -67.02 1.90 -65.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.981 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds