Wall clock time and date at job start Mon Mar 30 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46973 * 299.99908 * 3 2 1 6 6 H 1.48500 * 109.46937 * 59.99881 * 3 2 1 7 7 C 1.40216 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.41259 * 120.00115 * 359.97438 * 7 2 1 10 10 N 1.30632 * 123.22342 * 179.97438 * 9 7 2 11 11 C 1.47580 * 108.33723 * 180.65380 * 10 9 7 12 12 H 1.09000 * 110.90953 * 256.75562 * 11 10 9 13 13 C 1.53000 * 110.90777 * 133.19204 * 11 10 9 14 14 C 1.50703 * 109.46912 * 66.45430 * 13 11 10 15 15 C 1.38234 * 120.00769 * 100.00315 * 14 13 11 16 16 C 1.38217 * 120.01221 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.02989 * 359.97438 * 16 15 14 18 18 C 1.38193 * 120.00942 * 359.97438 * 17 16 15 19 19 C 1.38333 * 120.00619 * 279.72725 * 14 13 11 20 20 Cl 1.73602 * 120.01085 * 359.97438 * 19 14 13 21 21 C 1.54792 * 102.10795 * 14.98998 * 11 10 9 22 22 O 1.35193 * 123.22131 * 0.02790 * 9 7 2 23 23 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 186.45508 * 13 11 10 25 25 H 1.09001 * 109.47194 * 306.45688 * 13 11 10 26 26 H 1.08005 * 119.99257 * 359.97438 * 15 14 13 27 27 H 1.08007 * 119.98415 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.99621 * 179.97438 * 17 16 15 29 29 H 1.08004 * 120.00640 * 180.02562 * 18 17 16 30 30 H 1.08997 * 111.01533 * 94.38762 * 21 11 10 31 31 H 1.09004 * 111.01731 * 218.27394 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.6999 1.3465 0.0006 5 1 1.8812 2.3965 -1.2126 6 1 1.8811 2.3965 1.2125 7 6 2.0071 -1.2143 0.0005 8 1 3.0870 -1.2142 0.0010 9 6 1.3008 -2.4377 0.0016 10 7 1.8894 -3.6039 0.0017 11 6 0.8480 -4.6495 -0.0130 12 1 0.7295 -5.0944 0.9750 13 6 1.1657 -5.7218 -1.0571 14 6 2.4082 -6.4696 -0.6472 15 6 2.3015 -7.7049 -0.0359 16 6 3.4410 -8.3906 0.3406 17 6 4.6882 -7.8418 0.1057 18 6 4.7960 -6.6075 -0.5062 19 6 3.6558 -5.9226 -0.8876 20 17 3.7907 -4.3749 -1.6623 21 6 -0.4133 -3.8460 -0.4126 22 8 -0.0490 -2.5137 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 0.3299 -6.4178 -1.1292 25 1 1.3292 -5.2489 -2.0255 26 1 1.3276 -8.1339 0.1482 27 1 3.3572 -9.3555 0.8185 28 1 5.5782 -8.3779 0.4005 29 1 5.7703 -6.1791 -0.6901 30 1 -0.5792 -3.8888 -1.4890 31 1 -1.2899 -4.1987 0.1308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260734645.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:24 Heat of formation + Delta-G solvation = -1.149054 kcal Electronic energy + Delta-G solvation = -17534.932387 eV Core-core repulsion = 14614.533334 eV Total energy + Delta-G solvation = -2920.399052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41304 -38.66332 -35.47581 -33.86537 -33.14155 -30.86477 -30.28263 -29.33670 -26.27113 -25.04988 -22.29102 -21.50577 -20.48447 -19.25153 -17.17907 -16.57498 -15.60385 -15.09633 -14.95411 -14.65603 -14.19090 -13.57684 -13.42448 -13.05399 -12.91956 -12.52132 -11.90638 -11.48661 -11.36850 -11.19554 -11.05379 -10.87031 -10.76414 -10.64732 -10.41118 -10.20014 -9.99836 -9.76277 -9.14133 -8.52087 -8.19335 -7.80735 -7.35499 -6.68364 -4.63496 1.59258 1.61964 2.99403 3.03750 3.12077 3.19137 3.95192 3.98029 4.04712 5.00874 5.11161 5.14969 5.23348 5.36057 5.53559 5.65586 5.81381 5.95798 6.03008 6.06225 6.13800 6.22268 6.34632 6.37330 6.58558 6.69101 6.80127 6.95351 7.14572 7.17314 7.22183 7.87979 8.37123 8.70759 8.96599 10.04194 10.33669 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.006172 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.489969 B = 4535.874019 C = 5191.577126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.079 3.921 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.447 4.447 8 H 0.100 0.900 9 C 0.409 3.591 10 N -0.663 5.663 11 C 0.049 3.951 12 H 0.051 0.949 13 C -0.065 4.065 14 C -0.053 4.053 15 C -0.116 4.116 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.002 4.002 20 Cl -0.026 7.026 21 C 0.017 3.983 22 O -0.315 6.315 23 H 0.278 0.722 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.054 0.946 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -10.396 -1.841 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.118 0.882 9 C 0.210 3.790 10 N -0.415 5.415 11 C -0.063 4.063 12 H 0.069 0.931 13 C -0.103 4.103 14 C -0.054 4.054 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.029 4.029 20 Cl 0.004 6.996 21 C -0.062 4.062 22 O -0.220 6.220 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.002 -10.412 -1.849 11.307 hybrid contribution -0.600 0.801 0.020 1.001 sum 3.402 -9.611 -1.829 10.358 Atomic orbital electron populations 1.69760 1.07405 1.28899 1.34600 1.26042 0.94856 1.01574 0.91847 0.86106 0.80866 0.80456 0.78403 1.18214 1.19904 1.19860 1.18812 0.94411 0.86301 1.48996 0.88247 1.21962 0.78246 0.94206 0.84557 1.75913 1.23274 0.95902 1.46367 1.23009 0.91515 0.96048 0.95761 0.93067 1.20626 0.93194 0.96490 0.99955 1.19715 0.94316 0.93892 0.97448 1.20969 0.98578 0.94452 0.99432 1.21033 0.92613 1.00010 1.01146 1.20946 0.97503 0.95529 1.00116 1.21033 0.97584 0.95329 1.00229 1.20870 0.93834 0.89026 0.99201 1.98415 1.97987 1.25378 1.77861 1.24233 0.98489 0.84733 0.98757 1.87356 1.23931 1.28728 1.81955 0.91096 0.92127 0.90712 0.86032 0.86354 0.86104 0.85693 0.92830 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.94 11.82 55.56 0.66 -20.29 16 2 C 0.08 2.04 5.50 -17.33 -0.10 1.94 16 3 Si 0.92 19.15 29.56 -169.99 -5.02 14.13 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.45 -12.33 9.47 -37.69 -0.36 -12.68 16 8 H 0.10 2.70 7.85 -52.49 -0.41 2.29 16 9 C 0.41 11.31 7.38 -16.91 -0.12 11.18 16 10 N -0.66 -16.86 7.96 -53.13 -0.42 -17.28 16 11 C 0.05 1.06 3.74 -66.39 -0.25 0.81 16 12 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.06 -1.18 4.70 -27.88 -0.13 -1.31 16 14 C -0.05 -0.93 5.11 -104.59 -0.53 -1.47 16 15 C -0.12 -1.73 9.67 -39.59 -0.38 -2.11 16 16 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 17 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 18 C -0.12 -1.92 9.83 -39.55 -0.39 -2.31 16 19 C 0.00 -0.04 6.05 -39.50 -0.24 -0.28 16 20 Cl -0.03 -0.53 24.58 -51.86 -1.27 -1.80 16 21 C 0.02 0.36 7.71 38.10 0.29 0.66 16 22 O -0.31 -8.61 9.19 -17.28 -0.16 -8.76 16 23 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 24 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 25 H 0.07 1.45 7.34 -51.93 -0.38 1.06 16 26 H 0.12 1.53 8.04 -52.48 -0.42 1.11 16 27 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 30 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 281.57 15.07 4.24 4.24 Total: -1.00 -29.75 281.57 -8.27 -38.03 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.29 Total: 1.48 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.00 Total: -9.75 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.23 Total: -37.57 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.16 Total: -8.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.27 Total: -1.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.75 -8.27 -38.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734645.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.879 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds