Wall clock time and date at job start Mon Mar 30 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46973 * 299.99908 * 3 2 1 6 6 H 1.48500 * 109.46937 * 59.99881 * 3 2 1 7 7 C 1.40216 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.41259 * 120.00115 * 359.97438 * 7 2 1 10 10 N 1.30632 * 123.22342 * 179.97438 * 9 7 2 11 11 C 1.47580 * 108.33723 * 180.65380 * 10 9 7 12 12 H 1.09000 * 110.90953 * 256.75562 * 11 10 9 13 13 C 1.53000 * 110.90777 * 133.19204 * 11 10 9 14 14 C 1.50703 * 109.46912 * 66.45430 * 13 11 10 15 15 C 1.38234 * 120.00769 * 100.00315 * 14 13 11 16 16 C 1.38217 * 120.01221 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.02989 * 359.97438 * 16 15 14 18 18 C 1.38193 * 120.00942 * 359.97438 * 17 16 15 19 19 C 1.38333 * 120.00619 * 279.72725 * 14 13 11 20 20 Cl 1.73602 * 120.01085 * 359.97438 * 19 14 13 21 21 C 1.54792 * 102.10795 * 14.98998 * 11 10 9 22 22 O 1.35193 * 123.22131 * 0.02790 * 9 7 2 23 23 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 186.45508 * 13 11 10 25 25 H 1.09001 * 109.47194 * 306.45688 * 13 11 10 26 26 H 1.08005 * 119.99257 * 359.97438 * 15 14 13 27 27 H 1.08007 * 119.98415 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.99621 * 179.97438 * 17 16 15 29 29 H 1.08004 * 120.00640 * 180.02562 * 18 17 16 30 30 H 1.08997 * 111.01533 * 94.38762 * 21 11 10 31 31 H 1.09004 * 111.01731 * 218.27394 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.6999 1.3465 0.0006 5 1 1.8812 2.3965 -1.2126 6 1 1.8811 2.3965 1.2125 7 6 2.0071 -1.2143 0.0005 8 1 3.0870 -1.2142 0.0010 9 6 1.3008 -2.4377 0.0016 10 7 1.8894 -3.6039 0.0017 11 6 0.8480 -4.6495 -0.0130 12 1 0.7295 -5.0944 0.9750 13 6 1.1657 -5.7218 -1.0571 14 6 2.4082 -6.4696 -0.6472 15 6 2.3015 -7.7049 -0.0359 16 6 3.4410 -8.3906 0.3406 17 6 4.6882 -7.8418 0.1057 18 6 4.7960 -6.6075 -0.5062 19 6 3.6558 -5.9226 -0.8876 20 17 3.7907 -4.3749 -1.6623 21 6 -0.4133 -3.8460 -0.4126 22 8 -0.0490 -2.5137 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 0.3299 -6.4178 -1.1292 25 1 1.3292 -5.2489 -2.0255 26 1 1.3276 -8.1339 0.1482 27 1 3.3572 -9.3555 0.8185 28 1 5.5782 -8.3779 0.4005 29 1 5.7703 -6.1791 -0.6901 30 1 -0.5792 -3.8888 -1.4890 31 1 -1.2899 -4.1987 0.1308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260734645.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:23 Heat of formation + Delta-G solvation = -20.023779 kcal Electronic energy + Delta-G solvation = -17535.750856 eV Core-core repulsion = 14614.533334 eV Total energy + Delta-G solvation = -2921.217522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.16386 -40.02364 -36.88573 -35.61273 -34.89983 -32.61693 -31.49855 -30.97705 -28.05752 -26.69005 -23.46938 -22.97820 -22.17490 -21.01298 -19.16914 -17.77451 -17.19859 -16.96887 -16.21811 -16.07039 -15.93427 -15.42056 -14.61286 -14.49568 -14.30865 -14.11242 -13.45088 -13.11559 -13.00834 -12.75661 -12.60448 -12.49474 -12.37115 -12.08373 -12.01350 -11.86142 -11.69655 -11.22505 -11.04206 -9.87166 -9.70981 -9.48985 -9.14507 -8.61559 -6.67416 0.40568 0.44296 1.32120 1.40956 1.57718 1.68336 2.07779 2.23768 2.82451 3.21164 3.44590 3.77033 3.95730 4.13274 4.24634 4.30821 4.39999 4.49109 4.49892 4.58672 4.70152 4.77633 4.90556 5.10891 5.24188 5.25917 5.31547 5.45847 5.56729 5.68188 5.91719 6.04945 6.32552 6.71761 6.93987 8.06330 8.41995 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.006172 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.489969 B = 4535.874019 C = 5191.577126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.090 0.910 9 C 0.383 3.617 10 N -0.666 5.666 11 C 0.048 3.952 12 H 0.049 0.951 13 C -0.055 4.055 14 C -0.081 4.081 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.135 4.135 19 C -0.031 4.031 20 Cl -0.061 7.061 21 C 0.012 3.988 22 O -0.345 6.345 23 H 0.288 0.712 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.147 0.853 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.060 0.940 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -12.030 -1.162 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.520 4.520 8 H 0.108 0.892 9 C 0.183 3.817 10 N -0.416 5.416 11 C -0.064 4.064 12 H 0.067 0.933 13 C -0.092 4.092 14 C -0.082 4.082 15 C -0.135 4.135 16 C -0.140 4.140 17 C -0.133 4.133 18 C -0.154 4.154 19 C -0.058 4.058 20 Cl -0.032 7.032 21 C -0.066 4.066 22 O -0.250 6.250 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.164 0.836 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.417 -12.085 -1.174 12.920 hybrid contribution -0.728 1.075 -0.149 1.307 sum 3.689 -11.010 -1.323 11.687 Atomic orbital electron populations 1.69819 1.08935 1.30472 1.34927 1.26937 0.95686 1.04825 0.90647 0.84980 0.79099 0.75427 0.79091 1.18224 1.18684 1.18607 1.19032 0.94270 0.87719 1.50942 0.89197 1.22271 0.78690 0.95003 0.85710 1.75861 1.24776 0.96266 1.44722 1.23086 0.90456 0.96031 0.96824 0.93322 1.20489 0.95129 0.95982 0.97640 1.19814 0.93518 0.95430 0.99412 1.21306 1.00602 0.93290 0.98270 1.21520 0.91753 1.01090 0.99631 1.21405 0.99277 0.94389 0.98215 1.21282 0.97220 0.96345 1.00541 1.21145 0.95383 0.88285 1.00973 1.98395 1.98085 1.27943 1.78779 1.24472 0.99590 0.82934 0.99565 1.87288 1.23950 1.31449 1.82361 0.90175 0.88850 0.92597 0.83570 0.82471 0.82533 0.84870 0.92230 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.52 11.82 21.87 0.26 -44.26 16 2 C 0.04 1.98 5.50 85.36 0.47 2.45 16 3 Si 0.99 39.64 29.56 68.60 2.03 41.67 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.48 -27.53 9.47 23.49 0.22 -27.31 16 8 H 0.09 5.12 7.85 -2.91 -0.02 5.09 16 9 C 0.38 21.95 7.38 85.61 0.63 22.58 16 10 N -0.67 -34.79 7.96 -435.96 -3.47 -38.27 16 11 C 0.05 2.08 3.74 45.40 0.17 2.25 16 12 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 13 C -0.05 -1.96 4.70 29.85 0.14 -1.82 16 14 C -0.08 -2.77 5.11 -19.84 -0.10 -2.87 16 15 C -0.12 -3.10 9.67 22.26 0.22 -2.89 16 16 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 17 C -0.11 -2.69 10.05 22.26 0.22 -2.46 16 18 C -0.14 -4.05 9.83 22.29 0.22 -3.83 16 19 C -0.03 -1.13 6.05 22.32 0.14 -1.00 16 20 Cl -0.06 -2.57 24.58 -2.72 -0.07 -2.64 16 21 C 0.01 0.53 7.71 72.59 0.56 1.09 16 22 O -0.35 -19.36 9.19 -84.73 -0.78 -20.14 16 23 H 0.29 14.08 8.29 -92.71 -0.77 13.31 16 24 H 0.09 2.66 8.00 -2.39 -0.02 2.64 16 25 H 0.06 2.20 7.34 -2.39 -0.02 2.18 16 26 H 0.15 3.09 8.04 -2.91 -0.02 3.07 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 30 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 31 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 Total: -1.00 -66.91 281.57 2.22 -64.69 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.14 Total: 15.26 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 3.11 Total: -16.31 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -3.21 Total: -82.53 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.78 Total: -20.14 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.07 Total: -2.64 kcal Total: -66.91 2.22 -64.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734645.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds