Wall clock time and date at job start Mon Mar 30 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.81764 * 305.70380 * 10 9 7 12 12 C 1.54820 * 110.92668 * 182.03038 * 10 9 7 13 13 O 1.44305 * 101.32400 * 218.36695 * 12 10 9 14 14 C 1.34931 * 107.70856 * 24.81764 * 13 12 10 15 15 C 1.48004 * 123.08289 * 162.72037 * 14 13 12 16 16 C 1.39516 * 120.12738 * 0.02562 * 15 14 13 17 17 C 1.37973 * 119.88407 * 179.97438 * 16 15 14 18 18 C 1.38336 * 120.15203 * 0.02562 * 17 16 15 19 19 C 1.38430 * 120.26549 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.94607 * 180.02562 * 19 18 17 21 21 C 1.38123 * 120.10806 * 359.69799 * 19 18 17 22 22 N 1.29623 * 113.83555 * 342.73789 * 14 13 12 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.09001 * 111.04329 * 336.36014 * 12 10 9 27 27 H 1.08997 * 111.04249 * 100.32311 * 12 10 9 28 28 H 1.08003 * 120.06149 * 359.95543 * 16 15 14 29 29 H 1.08004 * 119.91788 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.86792 * 179.97438 * 18 17 16 31 31 H 1.08007 * 120.07601 * 180.27243 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 1 2.9451 -3.5717 -0.8280 12 6 1.5058 -5.0216 -0.0427 13 8 2.3253 -5.8194 0.8373 14 6 2.9557 -4.9796 1.6846 15 6 3.5813 -5.4270 2.9491 16 6 3.5373 -6.7728 3.3143 17 6 4.1227 -7.1845 4.4940 18 6 4.7522 -6.2660 5.3148 19 6 4.7987 -4.9290 4.9590 20 17 5.5915 -3.7836 5.9950 21 6 4.2212 -4.5059 3.7778 22 7 2.9628 -3.7450 1.2898 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 0.4912 -4.9285 0.3447 27 1 1.5013 -5.4311 -1.0528 28 1 3.0456 -7.4911 2.6750 29 1 4.0885 -8.2261 4.7774 30 1 5.2085 -6.5932 6.2374 31 1 4.2616 -3.4633 3.4986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260736141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:36 Heat of formation + Delta-G solvation = 1.793042 kcal Electronic energy + Delta-G solvation = -16863.204912 eV Core-core repulsion = 13942.933438 eV Total energy + Delta-G solvation = -2920.271473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74657 -39.08587 -36.50913 -34.13481 -32.87760 -31.96526 -30.83381 -29.61176 -27.01673 -23.74889 -23.42083 -22.55416 -20.52548 -19.95266 -17.55412 -16.47767 -16.08356 -15.82969 -15.41878 -15.17849 -14.51927 -14.31786 -13.87187 -13.62621 -13.19041 -12.77946 -12.05911 -11.90661 -11.79438 -11.60470 -11.50154 -11.34240 -11.09937 -10.94138 -10.59260 -10.49924 -9.75207 -9.62681 -9.38007 -9.10756 -8.89651 -8.36434 -8.23341 -5.99776 -3.99966 0.73448 1.10895 2.02179 2.66351 3.36566 3.40082 3.43538 3.44422 3.72815 4.37635 4.48487 4.71140 4.87295 5.05972 5.19450 5.24837 5.36534 5.41425 5.47300 5.65904 5.76053 5.94658 6.04743 6.14271 6.27940 6.32848 6.48512 6.61557 6.85384 7.46352 7.61696 7.97391 8.14406 8.39293 9.03775 9.62908 11.12018 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005374 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.976518 B = 5208.877753 C = 6572.418761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.029 3.971 11 H 0.094 0.906 12 C 0.021 3.979 13 O -0.353 6.353 14 C 0.295 3.705 15 C -0.010 4.010 16 C -0.082 4.082 17 C -0.115 4.115 18 C -0.099 4.099 19 C -0.040 4.040 20 Cl -0.067 7.067 21 C -0.062 4.062 22 N -0.472 5.472 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -14.912 8.692 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.080 4.080 11 H 0.112 0.888 12 C -0.056 4.056 13 O -0.258 6.258 14 C 0.070 3.930 15 C -0.011 4.011 16 C -0.103 4.103 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.067 4.067 20 Cl -0.038 7.038 21 C -0.082 4.082 22 N -0.203 5.203 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.919 -14.005 8.870 18.372 hybrid contribution -0.001 0.594 -0.435 0.736 sum 7.919 -13.411 8.435 17.712 Atomic orbital electron populations 1.69944 1.06045 1.26760 1.51252 1.24992 0.94842 0.99267 0.95426 0.86610 0.79519 0.82928 0.78683 1.20293 1.21383 1.20160 1.21032 0.93183 0.90157 1.49882 0.92273 1.19067 0.92440 0.90464 0.97709 1.23997 0.96775 0.95565 0.91680 0.88848 1.24796 0.95077 0.91708 0.93992 1.86872 1.58095 1.35788 1.45059 1.23190 0.93202 0.86128 0.90494 1.17634 0.99416 0.93364 0.90726 1.21406 0.97565 0.94731 0.96549 1.21006 0.98332 0.99787 0.94190 1.21174 0.99312 0.91017 1.00396 1.20742 1.01280 0.90874 0.93785 1.98378 1.78748 1.60276 1.66394 1.21228 0.94188 1.01490 0.91308 1.75128 1.18725 1.15111 1.11345 0.92969 0.96002 0.95385 0.89983 0.87790 0.84394 0.84585 0.84768 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.50 -14.38 8.98 -34.44 -0.31 -14.69 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.04 1.03 4.65 -27.88 -0.13 0.90 16 10 C 0.03 0.62 3.67 -66.37 -0.24 0.37 16 11 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 12 C 0.02 0.36 7.73 38.12 0.29 0.65 16 13 O -0.35 -6.11 10.68 -16.51 -0.18 -6.28 16 14 C 0.30 5.38 7.59 -14.48 -0.11 5.27 16 15 C -0.01 -0.15 5.87 -104.97 -0.62 -0.77 16 16 C -0.08 -0.97 9.67 -39.20 -0.38 -1.35 16 17 C -0.11 -1.09 10.03 -39.64 -0.40 -1.48 16 18 C -0.10 -1.00 9.82 -39.47 -0.39 -1.39 16 19 C -0.04 -0.50 6.31 -39.55 -0.25 -0.75 16 20 Cl -0.07 -0.81 28.95 -51.86 -1.50 -2.31 16 21 C -0.06 -0.92 9.42 -39.17 -0.37 -1.29 16 22 N -0.47 -10.09 10.69 -51.28 -0.55 -10.64 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.40 7.92 -51.93 -0.41 0.98 16 27 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.14 1.46 7.77 -52.48 -0.41 1.05 16 29 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.15 2.52 7.71 -52.48 -0.40 2.11 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -31.36 291.81 -8.41 -39.76 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.30 Total: -2.71 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.99 Total: -13.01 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.19 Total: -36.97 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.18 Total: -6.28 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.36 -8.41 -39.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.558 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds