Wall clock time and date at job start Mon Mar 30 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.81764 * 305.70380 * 10 9 7 12 12 C 1.54820 * 110.92668 * 182.03038 * 10 9 7 13 13 O 1.44305 * 101.32400 * 218.36695 * 12 10 9 14 14 C 1.34931 * 107.70856 * 24.81764 * 13 12 10 15 15 C 1.48004 * 123.08289 * 162.72037 * 14 13 12 16 16 C 1.39516 * 120.12738 * 0.02562 * 15 14 13 17 17 C 1.37973 * 119.88407 * 179.97438 * 16 15 14 18 18 C 1.38336 * 120.15203 * 0.02562 * 17 16 15 19 19 C 1.38430 * 120.26549 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.94607 * 180.02562 * 19 18 17 21 21 C 1.38123 * 120.10806 * 359.69799 * 19 18 17 22 22 N 1.29623 * 113.83555 * 342.73789 * 14 13 12 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.09001 * 111.04329 * 336.36014 * 12 10 9 27 27 H 1.08997 * 111.04249 * 100.32311 * 12 10 9 28 28 H 1.08003 * 120.06149 * 359.95543 * 16 15 14 29 29 H 1.08004 * 119.91788 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.86792 * 179.97438 * 18 17 16 31 31 H 1.08007 * 120.07601 * 180.27243 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 1 2.9451 -3.5717 -0.8280 12 6 1.5058 -5.0216 -0.0427 13 8 2.3253 -5.8194 0.8373 14 6 2.9557 -4.9796 1.6846 15 6 3.5813 -5.4270 2.9491 16 6 3.5373 -6.7728 3.3143 17 6 4.1227 -7.1845 4.4940 18 6 4.7522 -6.2660 5.3148 19 6 4.7987 -4.9290 4.9590 20 17 5.5915 -3.7836 5.9950 21 6 4.2212 -4.5059 3.7778 22 7 2.9628 -3.7450 1.2898 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 0.4912 -4.9285 0.3447 27 1 1.5013 -5.4311 -1.0528 28 1 3.0456 -7.4911 2.6750 29 1 4.0885 -8.2261 4.7774 30 1 5.2085 -6.5932 6.2374 31 1 4.2616 -3.4633 3.4986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260736141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:36 Heat of formation + Delta-G solvation = -19.843707 kcal Electronic energy + Delta-G solvation = -16864.143151 eV Core-core repulsion = 13942.933438 eV Total energy + Delta-G solvation = -2921.209713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.17296 -40.07788 -37.46348 -35.97745 -34.49507 -33.50075 -31.78975 -31.09608 -28.80619 -25.36701 -24.81278 -23.64470 -22.05579 -21.35525 -18.82656 -18.34170 -17.69754 -16.98822 -16.62540 -16.50792 -16.15947 -15.69464 -14.86217 -14.66586 -14.61021 -14.51397 -13.68925 -13.61934 -13.27117 -13.10711 -12.73474 -12.57388 -12.44188 -12.42006 -12.38829 -11.89873 -11.70400 -11.43505 -11.00172 -10.59163 -10.57317 -9.87579 -9.56234 -8.22425 -6.29992 -0.30605 0.16376 1.06493 1.36406 1.39948 1.40113 1.47809 2.14355 2.39201 2.68102 3.02045 3.14385 3.68199 3.85483 3.95863 4.00301 4.12075 4.28402 4.33280 4.48158 4.51436 4.60656 4.77167 4.90204 5.11661 5.24651 5.28400 5.32787 5.37417 5.56835 5.71249 5.73900 6.20062 6.71238 6.80917 7.36895 8.89456 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005374 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.976518 B = 5208.877753 C = 6572.418761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.049 3.951 10 C 0.029 3.971 11 H 0.089 0.911 12 C 0.030 3.970 13 O -0.344 6.344 14 C 0.314 3.686 15 C -0.044 4.044 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.082 4.082 19 C -0.050 4.050 20 Cl -0.068 7.068 21 C -0.079 4.079 22 N -0.531 5.531 23 H 0.264 0.736 24 H -0.011 1.011 25 H 0.016 0.984 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -17.168 9.859 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.012 3.988 10 C -0.081 4.081 11 H 0.107 0.893 12 C -0.047 4.047 13 O -0.249 6.249 14 C 0.089 3.911 15 C -0.045 4.045 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.076 4.076 20 Cl -0.039 7.039 21 C -0.100 4.100 22 N -0.264 5.264 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.200 0.800 30 H 0.186 0.814 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.027 -16.279 10.034 21.147 hybrid contribution -0.311 1.169 -0.686 1.391 sum 8.716 -15.110 9.348 19.791 Atomic orbital electron populations 1.70058 1.07488 1.27775 1.52059 1.25862 0.95758 1.02965 0.94961 0.85564 0.78359 0.78550 0.78954 1.19031 1.20436 1.20060 1.21357 0.93066 0.91801 1.49742 0.93051 1.18837 0.92773 0.91818 0.95370 1.23711 0.96127 0.95967 0.92245 0.89288 1.24809 0.94381 0.89597 0.95878 1.86872 1.57805 1.35344 1.44848 1.23758 0.91097 0.85440 0.90761 1.17738 1.01578 0.95161 0.90049 1.21664 0.97025 0.93119 0.97573 1.21503 0.95890 1.01735 0.92359 1.21639 0.97642 0.89576 1.01265 1.20857 1.01512 0.92125 0.93130 1.98376 1.78702 1.60742 1.66097 1.21049 0.95825 1.00273 0.92841 1.75121 1.21896 1.17195 1.12169 0.92752 0.99248 0.96567 0.89990 0.84139 0.82838 0.80008 0.81399 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.52 -30.92 8.98 25.60 0.23 -30.69 16 8 H 0.05 3.05 7.74 -2.92 -0.02 3.03 16 9 C 0.05 2.65 4.65 29.85 0.14 2.79 16 10 C 0.03 1.27 3.67 45.40 0.17 1.44 16 11 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 12 C 0.03 1.00 7.73 72.60 0.56 1.57 16 13 O -0.34 -11.56 10.68 -82.00 -0.88 -12.43 16 14 C 0.31 11.56 7.59 87.61 0.67 12.23 16 15 C -0.04 -1.30 5.87 -20.09 -0.12 -1.42 16 16 C -0.07 -1.52 9.67 22.52 0.22 -1.31 16 17 C -0.10 -1.37 10.03 22.23 0.22 -1.14 16 18 C -0.08 -1.33 9.82 22.34 0.22 -1.11 16 19 C -0.05 -1.17 6.31 22.29 0.14 -1.03 16 20 Cl -0.07 -1.58 28.95 -2.72 -0.08 -1.66 16 21 C -0.08 -2.39 9.42 22.53 0.21 -2.18 16 22 N -0.53 -23.74 10.69 -430.72 -4.60 -28.34 16 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 2.79 7.92 -2.39 -0.02 2.77 16 27 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.15 2.67 7.77 -2.91 -0.02 2.65 16 29 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.12 4.36 7.71 -2.91 -0.02 4.34 16 Total: -1.00 -71.20 291.81 1.01 -70.19 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.14 Total: 1.54 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 3.12 Total: -20.28 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -4.32 Total: -85.67 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.88 Total: -12.43 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -71.20 1.01 -70.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.348 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds