Wall clock time and date at job start Mon Mar 30 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99895 * 2 1 4 4 H 1.48501 * 109.46912 * 240.00195 * 3 2 1 5 5 H 1.48499 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46882 * 120.00182 * 3 2 1 7 7 C 1.37870 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47128 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.82308 * 51.32970 * 10 9 7 12 12 C 1.54817 * 110.92191 * 174.99831 * 10 9 7 13 13 O 1.44243 * 101.35879 * 141.69110 * 12 10 9 14 14 C 1.34938 * 107.68492 * 335.13889 * 13 12 10 15 15 C 1.47999 * 123.08367 * 197.24588 * 14 13 12 16 16 C 1.39527 * 120.12791 * 0.02619 * 15 14 13 17 17 C 1.37967 * 119.88653 * 180.23316 * 16 15 14 18 18 C 1.38341 * 120.14934 * 359.51157 * 17 16 15 19 19 C 1.38440 * 120.26538 * 0.46751 * 18 17 16 20 20 Cl 1.73600 * 119.94232 * 179.76517 * 19 18 17 21 21 C 1.38114 * 120.11030 * 359.79244 * 19 18 17 22 22 N 1.29625 * 113.83285 * 17.51953 * 14 13 12 23 23 H 0.97004 * 119.99925 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47080 * 59.99828 * 9 7 2 25 25 H 1.09000 * 109.46579 * 300.00121 * 9 7 2 26 26 H 1.09009 * 111.04998 * 23.67084 * 12 10 9 27 27 H 1.09003 * 111.04894 * 259.71344 * 12 10 9 28 28 H 1.08002 * 120.05410 * 359.95092 * 16 15 14 29 29 H 1.07993 * 119.92045 * 179.74379 * 17 16 15 30 30 H 1.08002 * 119.86807 * 180.23568 * 18 17 16 31 31 H 1.08003 * 120.07982 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9809 -3.5428 0.7949 12 6 1.5097 -5.0184 0.1255 13 8 2.2902 -5.8482 -0.7592 14 6 2.8821 -5.0401 -1.6633 15 6 3.4530 -5.5336 -2.9364 16 6 3.3941 -6.8918 -3.2504 17 6 3.9322 -7.3471 -4.4364 18 6 4.5205 -6.4589 -5.3189 19 6 4.5819 -5.1099 -5.0139 20 17 5.3275 -4.0035 -6.1246 21 6 4.0515 -4.6430 -3.8272 22 7 2.9098 -3.7926 -1.3119 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 0.4790 -4.9385 -0.2205 27 1 1.5493 -5.3916 1.1489 28 1 2.9323 -7.5861 -2.5641 29 1 3.8907 -8.3989 -4.6781 30 1 4.9369 -6.8197 -6.2478 31 1 4.1000 -3.5905 -3.5896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260736144.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:37 Heat of formation + Delta-G solvation = -20.050334 kcal Electronic energy + Delta-G solvation = -16851.244569 eV Core-core repulsion = 13930.025895 eV Total energy + Delta-G solvation = -2921.218673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17986 -40.07869 -37.46376 -35.97985 -34.50377 -33.50244 -31.79147 -31.10231 -28.80651 -25.36665 -24.81639 -23.64612 -22.06109 -21.35797 -18.83978 -18.35343 -17.68388 -16.98948 -16.63005 -16.50993 -16.16221 -15.69003 -14.86600 -14.66687 -14.60897 -14.51843 -13.69513 -13.61189 -13.27718 -13.10911 -12.73750 -12.57404 -12.44134 -12.42720 -12.38475 -11.89894 -11.71244 -11.42882 -11.01392 -10.59566 -10.57441 -9.87733 -9.56509 -8.22657 -6.30586 -0.30862 0.16333 1.06456 1.36475 1.39812 1.40013 1.47876 2.14191 2.39024 2.67905 3.01424 3.14287 3.68065 3.85391 3.95766 4.00251 4.11956 4.28410 4.33232 4.48130 4.51249 4.60709 4.76883 4.89987 5.11576 5.24571 5.28318 5.32544 5.37342 5.56760 5.71156 5.73377 6.19431 6.70781 6.80157 7.36461 8.89191 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018144 B = 0.005286 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.865184 B = 5296.033647 C = 6630.525909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.050 3.950 10 C 0.029 3.971 11 H 0.089 0.911 12 C 0.029 3.971 13 O -0.344 6.344 14 C 0.314 3.686 15 C -0.044 4.044 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.082 4.082 19 C -0.050 4.050 20 Cl -0.068 7.068 21 C -0.079 4.079 22 N -0.532 5.532 23 H 0.264 0.736 24 H -0.011 1.011 25 H 0.016 0.984 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 -17.518 -9.695 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.012 3.988 10 C -0.080 4.080 11 H 0.106 0.894 12 C -0.047 4.047 13 O -0.248 6.248 14 C 0.090 3.910 15 C -0.045 4.045 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.076 4.076 20 Cl -0.039 7.039 21 C -0.100 4.100 22 N -0.265 5.265 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.035 0.965 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.200 0.800 30 H 0.186 0.814 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.575 -16.638 -9.908 21.178 hybrid contribution -0.279 1.195 0.695 1.411 sum 8.296 -15.443 -9.213 19.803 Atomic orbital electron populations 1.70056 1.07503 1.27799 1.51984 1.25860 0.95760 1.02979 0.94911 0.85560 0.78359 0.78517 0.78965 1.20039 1.20426 1.19012 1.21366 0.93048 0.91846 1.49878 0.93073 1.18830 0.92791 0.91768 0.95377 1.23710 0.96659 0.96081 0.91570 0.89357 1.24802 0.95155 0.88834 0.95892 1.86868 1.60963 1.35769 1.41229 1.23758 0.91106 0.85860 0.90279 1.17740 1.02355 0.94971 0.89484 1.21665 0.96815 0.92774 0.98114 1.21501 0.96197 1.01889 0.91897 1.21644 0.97442 0.89664 1.01361 1.20856 1.02184 0.92347 0.92238 1.98376 1.80806 1.63347 1.61377 1.21047 0.96091 1.00402 0.92438 1.75113 1.21956 1.16231 1.13198 0.92733 0.99239 0.96544 0.89961 0.84163 0.82837 0.80008 0.81396 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.44 0.28 -57.29 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.52 -31.01 9.04 25.60 0.23 -30.78 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.05 2.67 4.64 29.85 0.14 2.81 16 10 C 0.03 1.29 3.64 45.40 0.17 1.45 16 11 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 12 C 0.03 1.00 7.72 72.60 0.56 1.56 16 13 O -0.34 -11.54 10.68 -82.08 -0.88 -12.42 16 14 C 0.31 11.57 7.59 87.61 0.66 12.24 16 15 C -0.04 -1.30 5.87 -20.08 -0.12 -1.42 16 16 C -0.07 -1.52 9.67 22.52 0.22 -1.30 16 17 C -0.10 -1.36 10.03 22.23 0.22 -1.14 16 18 C -0.08 -1.32 9.82 22.34 0.22 -1.10 16 19 C -0.05 -1.17 6.31 22.29 0.14 -1.03 16 20 Cl -0.07 -1.58 28.95 -2.72 -0.08 -1.65 16 21 C -0.08 -2.38 9.42 22.53 0.21 -2.17 16 22 N -0.53 -23.78 10.76 -430.73 -4.63 -28.41 16 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 2.80 7.92 -2.38 -0.02 2.78 16 27 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.15 2.66 7.77 -2.91 -0.02 2.64 16 29 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 31 H 0.12 4.35 7.71 -2.91 -0.02 4.33 16 Total: -1.00 -71.18 291.88 0.98 -70.20 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.14 Total: 1.62 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.12 Total: -20.27 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -4.35 Total: -85.70 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.88 Total: -12.42 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -71.18 0.98 -70.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736144.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.152 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds