Wall clock time and date at job start Mon Mar 30 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30603 * 1 3 3 Si 1.86794 * 119.99769 * 2 1 4 4 H 1.48494 * 109.47340 * 270.00387 * 3 2 1 5 5 H 1.48505 * 109.47080 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47404 * 149.99984 * 3 2 1 7 7 C 1.40212 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.41263 * 120.00264 * 359.97438 * 7 2 1 10 10 N 1.30635 * 123.22099 * 0.02562 * 9 7 2 11 11 C 1.47586 * 108.33498 * 180.60451 * 10 9 7 12 12 C 1.54787 * 102.10971 * 14.98814 * 11 10 9 13 13 H 1.09000 * 111.04578 * 94.39989 * 12 11 10 14 14 C 1.52992 * 111.01787 * 218.27356 * 12 11 10 15 15 C 1.50700 * 109.46800 * 178.57761 * 14 12 11 16 16 C 1.38263 * 119.99222 * 90.00528 * 15 14 12 17 17 C 1.38224 * 120.02332 * 180.02562 * 16 15 14 18 18 C 1.38236 * 120.01528 * 359.97438 * 17 16 15 19 19 C 1.38335 * 119.98682 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 120.01202 * 180.02562 * 19 18 17 21 21 C 1.38198 * 119.99438 * 270.27308 * 15 14 12 22 22 O 1.35193 * 123.22970 * 179.97438 * 9 7 2 23 23 H 0.97001 * 120.00733 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.90668 * 256.78526 * 11 10 9 25 25 H 1.09005 * 110.90356 * 133.19174 * 11 10 9 26 26 H 1.08996 * 109.47220 * 58.57891 * 14 12 11 27 27 H 1.08998 * 109.47447 * 298.57417 * 14 12 11 28 28 H 1.07991 * 119.99092 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.99263 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.00765 * 179.97438 * 18 17 16 31 31 H 1.08000 * 120.00364 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4874 2.0465 -1.4000 5 1 1.4373 2.6527 0.7001 6 1 3.5375 1.4403 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3009 -2.4377 -0.0005 10 7 -0.0034 -2.5112 -0.0005 11 6 -0.3881 -3.9359 0.0142 12 6 0.9385 -4.6263 0.4137 13 1 0.9849 -4.7918 1.4901 14 6 1.1250 -5.9394 -0.3490 15 6 2.4405 -6.5635 0.0397 16 6 2.5005 -7.4424 1.1053 17 6 3.7069 -8.0147 1.4627 18 6 4.8540 -7.7091 0.7545 19 6 4.7944 -6.8305 -0.3124 20 17 6.2345 -6.4467 -1.2027 21 6 3.5877 -6.2528 -0.6656 22 8 1.9099 -3.6447 -0.0016 23 1 -0.4851 0.8400 0.0004 24 1 -0.7136 -4.2612 -0.9739 25 1 -1.1628 -4.1219 0.7582 26 1 1.1196 -5.7410 -1.4207 27 1 0.3120 -6.6220 -0.1017 28 1 1.6046 -7.6819 1.6586 29 1 3.7532 -8.7009 2.2954 30 1 5.7966 -8.1560 1.0341 31 1 3.5414 -5.5632 -1.4955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:48 Heat of formation + Delta-G solvation = -25.488164 kcal Electronic energy + Delta-G solvation = -17111.982969 eV Core-core repulsion = 14190.528494 eV Total energy + Delta-G solvation = -2921.454475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36855 -40.14295 -37.47613 -35.69201 -34.44211 -33.28065 -31.69235 -31.01289 -28.65248 -25.99035 -23.62824 -23.06283 -22.49179 -21.52182 -18.78902 -17.99789 -17.36067 -17.19861 -16.49245 -16.20751 -15.91190 -15.40593 -14.70822 -14.54218 -14.30367 -14.12935 -13.75502 -13.46521 -13.06715 -12.97379 -12.74306 -12.54363 -12.36403 -12.26246 -12.17328 -12.10903 -11.84670 -11.66877 -11.05987 -9.98533 -9.75877 -9.57501 -9.38361 -8.41323 -6.77303 0.19580 0.32093 1.15374 1.39925 1.42712 1.58352 2.13263 2.24928 2.65004 3.01679 3.35234 3.63344 3.88842 4.05610 4.09577 4.14160 4.19717 4.34604 4.41955 4.59549 4.71359 4.79076 4.85757 4.93595 5.02525 5.11647 5.27842 5.35182 5.37893 5.56644 5.83874 5.91338 6.13285 6.72360 6.90361 8.08388 8.52228 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.005326 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.994050 B = 5255.972250 C = 6259.210676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.356 3.644 10 N -0.643 5.643 11 C 0.003 3.997 12 C 0.057 3.943 13 H 0.071 0.929 14 C -0.061 4.061 15 C -0.076 4.076 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.047 4.047 20 Cl -0.079 7.079 21 C -0.113 4.113 22 O -0.379 6.379 23 H 0.280 0.720 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.153 0.847 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -14.114 2.177 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.156 3.844 10 N -0.391 5.391 11 C -0.128 4.128 12 C -0.001 4.001 13 H 0.089 0.911 14 C -0.099 4.099 15 C -0.076 4.076 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.073 4.073 20 Cl -0.050 7.050 21 C -0.132 4.132 22 O -0.287 6.287 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.170 0.830 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.188 -13.647 2.030 15.121 hybrid contribution 0.657 0.253 -0.321 0.773 sum 6.845 -13.394 1.708 15.139 Atomic orbital electron populations 1.70122 1.08882 1.29324 1.31598 1.26804 0.95729 1.04023 0.92233 0.84977 0.78692 0.74990 0.79553 1.18560 1.18877 1.17975 1.19013 0.94395 0.87854 1.51324 0.89847 1.22284 0.88542 0.84907 0.88711 1.76137 1.09563 1.11381 1.41973 1.23887 0.96794 0.92515 0.99586 1.23893 0.88697 0.89299 0.98245 0.91093 1.20677 0.95631 0.93473 1.00085 1.19859 0.94453 0.96955 0.96368 1.21486 0.99965 0.96024 0.95797 1.21476 0.90976 0.99701 0.99866 1.21347 1.00951 0.97465 0.94017 1.21062 0.87527 1.01360 0.97357 1.98349 1.37733 1.93726 1.75222 1.20977 0.91715 0.99312 1.01208 1.86937 1.40775 1.17166 1.83840 0.90919 0.92997 0.91189 0.91236 0.85998 0.82972 0.81558 0.82951 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.20 11.74 21.87 0.26 -43.94 16 2 C 0.03 1.75 5.50 85.36 0.47 2.22 16 3 Si 1.00 40.01 29.56 68.60 2.03 42.04 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.49 -28.32 9.50 23.49 0.22 -28.09 16 8 H 0.08 4.62 7.85 -2.91 -0.02 4.59 16 9 C 0.36 20.88 7.43 85.61 0.64 21.52 16 10 N -0.64 -37.72 9.69 -456.20 -4.42 -42.14 16 11 C 0.00 0.13 7.68 86.78 0.67 0.80 16 12 C 0.06 2.34 3.71 31.20 0.12 2.45 16 13 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 14 C -0.06 -1.89 5.07 29.85 0.15 -1.74 16 15 C -0.08 -2.22 5.01 -19.87 -0.10 -2.32 16 16 C -0.11 -2.60 9.70 22.27 0.22 -2.38 16 17 C -0.10 -1.98 10.05 22.27 0.22 -1.76 16 18 C -0.12 -2.65 9.83 22.29 0.22 -2.43 16 19 C -0.05 -1.31 6.32 22.32 0.14 -1.17 16 20 Cl -0.08 -2.13 28.96 -2.72 -0.08 -2.21 16 21 C -0.11 -3.63 9.32 22.29 0.21 -3.42 16 22 O -0.38 -19.63 10.59 -84.73 -0.90 -20.52 16 23 H 0.28 14.40 8.29 -92.71 -0.77 13.63 16 24 H 0.05 2.28 7.91 -2.39 -0.02 2.26 16 25 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 26 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 27 H 0.12 2.83 8.09 -2.39 -0.02 2.81 16 28 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -69.73 289.71 1.20 -68.53 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.14 Total: 14.58 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 3.17 Total: -16.33 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -4.16 Total: -86.08 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.90 Total: -20.52 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -69.73 1.20 -68.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.043 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds