Wall clock time and date at job start Mon Mar 30 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48508 * 109.46925 * 274.98861 * 3 2 1 5 5 H 1.48503 * 109.47119 * 34.98210 * 3 2 1 6 6 H 1.48498 * 109.47240 * 154.98924 * 3 2 1 7 7 C 1.40214 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00303 * 186.12424 * 7 2 1 9 9 C 1.41260 * 120.00445 * 6.12711 * 7 2 1 10 10 N 1.30642 * 123.22083 * 354.09688 * 9 7 2 11 11 C 1.47579 * 108.33945 * 179.35304 * 10 9 7 12 12 C 1.54795 * 102.10441 * 345.00888 * 11 10 9 13 13 H 1.08995 * 111.04929 * 265.59565 * 12 11 10 14 14 C 1.53000 * 111.01534 * 141.72496 * 12 11 10 15 15 C 1.50694 * 109.47120 * 181.42202 * 14 12 11 16 16 C 1.38267 * 119.99707 * 270.27755 * 15 14 12 17 17 C 1.38214 * 120.02964 * 180.27574 * 16 15 14 18 18 C 1.38242 * 120.01436 * 359.44558 * 17 16 15 19 19 C 1.38332 * 119.98122 * 0.28081 * 18 17 16 20 20 Cl 1.73603 * 120.01196 * 179.97438 * 19 18 17 21 21 C 1.38194 * 119.99318 * 90.00226 * 15 14 12 22 22 O 1.35180 * 123.22876 * 174.07514 * 9 7 2 23 23 H 0.97006 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.90514 * 226.80902 * 11 10 9 25 25 H 1.08999 * 110.90477 * 103.20911 * 11 10 9 26 26 H 1.09007 * 109.47105 * 61.42316 * 14 12 11 27 27 H 1.08998 * 109.47621 * 301.42743 * 14 12 11 28 28 H 1.08003 * 119.98226 * 0.02562 * 16 15 14 29 29 H 1.08000 * 119.99738 * 179.72733 * 17 16 15 30 30 H 1.07994 * 120.00771 * 180.25485 * 18 17 16 31 31 H 1.08000 * 120.00618 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3820 2.1072 -1.3949 5 1 1.4941 2.6200 0.8027 6 1 3.5863 1.4120 0.5919 7 6 2.0070 -1.2143 -0.0005 8 1 3.0824 -1.2171 0.0992 9 6 1.3068 -2.4341 -0.1317 10 7 0.0029 -2.5132 -0.1441 11 6 -0.3749 -3.9300 -0.3109 12 6 0.9563 -4.5682 -0.7766 13 1 1.0069 -4.6187 -1.8642 14 6 1.1470 -5.9538 -0.1564 15 6 2.4667 -6.5273 -0.6042 16 6 2.5354 -7.2834 -1.7597 17 6 3.7443 -7.8145 -2.1680 18 6 4.8879 -7.5804 -1.4273 19 6 4.8208 -6.8192 -0.2742 20 17 6.2562 -6.5253 0.6569 21 6 3.6091 -6.2926 0.1372 22 8 1.9218 -3.6315 -0.2567 23 1 -0.4851 0.8401 0.0004 24 1 -1.1463 -4.0397 -1.0731 25 1 -0.7018 -4.3595 0.6361 26 1 0.3380 -6.6101 -0.4775 27 1 1.1372 -5.8701 0.9303 28 1 1.6431 -7.4625 -2.3414 29 1 3.7966 -8.4087 -3.0683 30 1 5.8332 -7.9919 -1.7486 31 1 3.5562 -5.6979 1.0371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260738240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:49 Heat of formation + Delta-G solvation = -4.817574 kcal Electronic energy + Delta-G solvation = -17111.567877 eV Core-core repulsion = 14191.009745 eV Total energy + Delta-G solvation = -2920.558131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71771 -38.85799 -36.40094 -33.83786 -32.97746 -31.34388 -30.64725 -29.43145 -26.91759 -24.32249 -22.59771 -21.59680 -20.82956 -19.79098 -16.94607 -16.73409 -15.81711 -15.44174 -15.25448 -14.92218 -14.26834 -13.72304 -13.65534 -13.32365 -13.01849 -12.41057 -12.03614 -11.93021 -11.54562 -11.45253 -11.35833 -11.23408 -11.06419 -10.86294 -10.67613 -10.48420 -10.24405 -9.96856 -9.13863 -8.77471 -8.58827 -7.79557 -7.36485 -6.41966 -4.62726 1.23526 1.36943 2.21535 3.08461 3.17064 3.21545 3.69755 4.00271 4.16054 4.66464 4.80355 4.91467 5.11687 5.29151 5.33674 5.41403 5.52710 5.68209 5.77294 5.86786 5.92348 6.11425 6.26805 6.31863 6.36451 6.55915 6.65588 6.82988 6.86438 6.94927 7.36017 7.77274 8.23910 8.79677 8.99251 10.11610 10.49835 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005319 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.691495 B = 5262.681252 C = 6239.039829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.078 3.922 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.376 3.624 10 N -0.601 5.601 11 C 0.008 3.992 12 C 0.054 3.946 13 H 0.067 0.933 14 C -0.073 4.073 15 C -0.056 4.056 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.032 4.032 20 Cl -0.078 7.078 21 C -0.089 4.089 22 O -0.365 6.365 23 H 0.272 0.728 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -12.929 -2.363 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.176 3.824 10 N -0.347 5.347 11 C -0.123 4.123 12 C -0.005 4.005 13 H 0.084 0.916 14 C -0.111 4.111 15 C -0.056 4.056 16 C -0.135 4.135 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.058 4.058 20 Cl -0.049 7.049 21 C -0.107 4.107 22 O -0.273 6.273 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.584 -12.450 -2.167 13.816 hybrid contribution 0.895 0.081 -0.137 0.909 sum 6.479 -12.368 -2.304 14.152 Atomic orbital electron populations 1.70027 1.07002 1.27659 1.31232 1.25733 0.94811 1.00403 0.93635 0.86190 0.80292 0.80643 0.78875 1.19627 1.20234 1.18598 1.18550 0.94384 0.86674 1.49399 0.89904 1.22006 0.87954 0.83767 0.88680 1.76248 1.09261 1.07804 1.41377 1.23845 0.95239 0.94866 0.98379 1.23708 0.91179 0.88569 0.97052 0.91560 1.20749 0.93457 0.95081 1.01794 1.19862 0.95408 0.95869 0.94505 1.21146 0.98204 0.97883 0.96252 1.21011 0.92080 1.00202 0.99602 1.20963 0.99359 0.99548 0.94199 1.20907 0.88027 1.01832 0.95069 1.98357 1.38316 1.95170 1.73028 1.21019 0.90278 0.98356 1.01063 1.86949 1.39520 1.20310 1.80561 0.91720 0.92561 0.93636 0.89592 0.90103 0.85601 0.85404 0.85396 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.60 11.76 55.56 0.65 -19.95 16 2 C 0.08 2.08 5.49 -17.34 -0.10 1.99 16 3 Si 0.92 19.50 29.56 -169.99 -5.03 14.48 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -12.75 9.50 -37.69 -0.36 -13.11 16 8 H 0.08 2.23 7.86 -52.49 -0.41 1.81 16 9 C 0.38 10.67 7.43 -16.91 -0.13 10.55 16 10 N -0.60 -17.14 9.71 -59.54 -0.58 -17.72 16 11 C 0.01 0.18 7.68 -2.51 -0.02 0.16 16 12 C 0.05 1.11 3.71 -25.79 -0.10 1.02 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.07 -1.16 5.07 -27.89 -0.14 -1.30 16 15 C -0.06 -0.85 5.01 -104.63 -0.52 -1.37 16 16 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 17 C -0.11 -1.28 10.05 -39.59 -0.40 -1.68 16 18 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 16 19 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 20 Cl -0.08 -1.05 28.96 -51.86 -1.50 -2.56 16 21 C -0.09 -1.40 9.33 -39.55 -0.37 -1.77 16 22 O -0.36 -9.18 10.60 -17.24 -0.18 -9.36 16 23 H 0.27 6.90 8.29 -40.82 -0.34 6.57 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 26 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 27 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -31.13 289.78 -8.75 -39.88 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.33 Total: 0.88 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.15 Total: -10.02 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.08 Total: -37.67 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.18 Total: -9.36 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.13 -8.75 -39.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.066 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds