Wall clock time and date at job start Mon Mar 30 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48508 * 109.46925 * 274.98861 * 3 2 1 5 5 H 1.48503 * 109.47119 * 34.98210 * 3 2 1 6 6 H 1.48498 * 109.47240 * 154.98924 * 3 2 1 7 7 C 1.40214 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00303 * 186.12424 * 7 2 1 9 9 C 1.41260 * 120.00445 * 6.12711 * 7 2 1 10 10 N 1.30642 * 123.22083 * 354.09688 * 9 7 2 11 11 C 1.47579 * 108.33945 * 179.35304 * 10 9 7 12 12 C 1.54795 * 102.10441 * 345.00888 * 11 10 9 13 13 H 1.08995 * 111.04929 * 265.59565 * 12 11 10 14 14 C 1.53000 * 111.01534 * 141.72496 * 12 11 10 15 15 C 1.50694 * 109.47120 * 181.42202 * 14 12 11 16 16 C 1.38267 * 119.99707 * 270.27755 * 15 14 12 17 17 C 1.38214 * 120.02964 * 180.27574 * 16 15 14 18 18 C 1.38242 * 120.01436 * 359.44558 * 17 16 15 19 19 C 1.38332 * 119.98122 * 0.28081 * 18 17 16 20 20 Cl 1.73603 * 120.01196 * 179.97438 * 19 18 17 21 21 C 1.38194 * 119.99318 * 90.00226 * 15 14 12 22 22 O 1.35180 * 123.22876 * 174.07514 * 9 7 2 23 23 H 0.97006 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.90514 * 226.80902 * 11 10 9 25 25 H 1.08999 * 110.90477 * 103.20911 * 11 10 9 26 26 H 1.09007 * 109.47105 * 61.42316 * 14 12 11 27 27 H 1.08998 * 109.47621 * 301.42743 * 14 12 11 28 28 H 1.08003 * 119.98226 * 0.02562 * 16 15 14 29 29 H 1.08000 * 119.99738 * 179.72733 * 17 16 15 30 30 H 1.07994 * 120.00771 * 180.25485 * 18 17 16 31 31 H 1.08000 * 120.00618 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3820 2.1072 -1.3949 5 1 1.4941 2.6200 0.8027 6 1 3.5863 1.4120 0.5919 7 6 2.0070 -1.2143 -0.0005 8 1 3.0824 -1.2171 0.0992 9 6 1.3068 -2.4341 -0.1317 10 7 0.0029 -2.5132 -0.1441 11 6 -0.3749 -3.9300 -0.3109 12 6 0.9563 -4.5682 -0.7766 13 1 1.0069 -4.6187 -1.8642 14 6 1.1470 -5.9538 -0.1564 15 6 2.4667 -6.5273 -0.6042 16 6 2.5354 -7.2834 -1.7597 17 6 3.7443 -7.8145 -2.1680 18 6 4.8879 -7.5804 -1.4273 19 6 4.8208 -6.8192 -0.2742 20 17 6.2562 -6.5253 0.6569 21 6 3.6091 -6.2926 0.1372 22 8 1.9218 -3.6315 -0.2567 23 1 -0.4851 0.8401 0.0004 24 1 -1.1463 -4.0397 -1.0731 25 1 -0.7018 -4.3595 0.6361 26 1 0.3380 -6.6101 -0.4775 27 1 1.1372 -5.8701 0.9303 28 1 1.6431 -7.4625 -2.3414 29 1 3.7966 -8.4087 -3.0683 30 1 5.8332 -7.9919 -1.7486 31 1 3.5562 -5.6979 1.0371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:49 Heat of formation + Delta-G solvation = -25.564071 kcal Electronic energy + Delta-G solvation = -17112.467512 eV Core-core repulsion = 14191.009745 eV Total energy + Delta-G solvation = -2921.457767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37210 -40.14379 -37.47613 -35.69158 -34.44344 -33.28612 -31.69266 -31.01556 -28.65309 -25.99202 -23.62833 -23.06625 -22.49461 -21.51782 -18.79288 -17.99879 -17.35125 -17.20676 -16.49375 -16.20884 -15.91282 -15.41147 -14.70862 -14.54098 -14.31615 -14.12248 -13.76358 -13.46680 -13.10083 -12.94992 -12.74600 -12.54563 -12.36471 -12.26146 -12.17082 -12.11032 -11.83589 -11.66872 -11.06197 -9.98680 -9.76118 -9.57732 -9.38044 -8.42283 -6.77061 0.19617 0.32027 1.15346 1.39360 1.42611 1.58802 2.12743 2.25548 2.65031 2.98385 3.36685 3.63116 3.88809 4.05395 4.09655 4.13899 4.19684 4.34519 4.41918 4.59536 4.71139 4.79187 4.85711 4.93449 5.02726 5.11500 5.27818 5.35058 5.37851 5.56591 5.83617 5.91167 6.13553 6.72306 6.90196 8.07905 8.51924 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005319 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.691495 B = 5262.681252 C = 6239.039829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.357 3.643 10 N -0.644 5.644 11 C 0.003 3.997 12 C 0.057 3.943 13 H 0.071 0.929 14 C -0.062 4.062 15 C -0.076 4.076 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.047 4.047 20 Cl -0.079 7.079 21 C -0.113 4.113 22 O -0.379 6.379 23 H 0.280 0.720 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -13.791 -3.797 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.101 0.899 9 C 0.156 3.844 10 N -0.391 5.391 11 C -0.128 4.128 12 C -0.001 4.001 13 H 0.089 0.911 14 C -0.099 4.099 15 C -0.076 4.076 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.073 4.073 20 Cl -0.050 7.050 21 C -0.132 4.132 22 O -0.287 6.287 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.170 0.830 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.265 -13.346 -3.600 15.176 hybrid contribution 0.651 0.224 0.278 0.743 sum 6.916 -13.121 -3.322 15.200 Atomic orbital electron populations 1.70125 1.08902 1.29332 1.31603 1.26805 0.95712 1.04019 0.92202 0.84964 0.78774 0.75049 0.79409 1.18576 1.18899 1.17965 1.19008 0.94796 0.87963 1.50930 0.89867 1.22281 0.88431 0.84824 0.88839 1.76129 1.09728 1.11523 1.41698 1.23889 0.96742 0.92840 0.99301 1.23897 0.88770 0.89884 0.97559 0.91105 1.20681 0.95561 0.92757 1.00880 1.19858 0.94487 0.97407 0.95872 1.21485 0.99927 0.96680 0.95197 1.21474 0.90989 0.99290 1.00258 1.21346 1.00979 0.98356 0.93097 1.21064 0.87553 1.02630 0.96054 1.98350 1.38133 1.95269 1.73284 1.20979 0.91684 0.99457 1.01102 1.86927 1.40821 1.20198 1.80772 0.90912 0.91243 0.92902 0.85996 0.91208 0.82986 0.81561 0.82950 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.21 11.76 21.86 0.26 -43.95 16 2 C 0.03 1.78 5.49 85.36 0.47 2.25 16 3 Si 1.00 40.02 29.56 68.60 2.03 42.05 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.49 -28.39 9.50 23.49 0.22 -28.17 16 8 H 0.08 4.62 7.86 -2.91 -0.02 4.59 16 9 C 0.36 20.92 7.43 85.61 0.64 21.56 16 10 N -0.64 -37.73 9.71 -456.22 -4.43 -42.16 16 11 C 0.00 0.14 7.68 86.79 0.67 0.81 16 12 C 0.06 2.35 3.71 31.21 0.12 2.46 16 13 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 14 C -0.06 -1.89 5.07 29.85 0.15 -1.74 16 15 C -0.08 -2.22 5.01 -19.87 -0.10 -2.32 16 16 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 17 C -0.10 -1.98 10.05 22.27 0.22 -1.76 16 18 C -0.12 -2.65 9.83 22.29 0.22 -2.43 16 19 C -0.05 -1.31 6.32 22.33 0.14 -1.17 16 20 Cl -0.08 -2.14 28.96 -2.72 -0.08 -2.21 16 21 C -0.11 -3.63 9.33 22.29 0.21 -3.42 16 22 O -0.38 -19.62 10.60 -84.60 -0.90 -20.52 16 23 H 0.28 14.38 8.29 -92.70 -0.77 13.62 16 24 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.05 2.32 7.91 -2.39 -0.02 2.30 16 26 H 0.12 2.82 8.09 -2.38 -0.02 2.80 16 27 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 28 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -69.74 289.78 1.19 -68.55 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.14 Total: 14.55 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.17 Total: -16.32 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.17 Total: -86.11 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.90 Total: -20.52 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.21 kcal Total: -69.74 1.19 -68.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.987 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds