Wall clock time and date at job start Mon Mar 30 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48500 * 109.47299 * 239.99695 * 3 2 1 5 5 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99509 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.94367 * 59.30115 * 9 7 2 11 11 C 1.54842 * 111.07818 * 183.37187 * 9 7 2 12 12 N 1.47600 * 101.89597 * 141.22617 * 11 9 7 13 13 C 1.28642 * 108.54662 * 345.04683 * 12 11 9 14 14 C 1.50697 * 122.93830 * 179.58928 * 13 12 11 15 15 C 1.50694 * 109.47343 * 359.97438 * 14 13 12 16 16 C 1.38227 * 120.01186 * 99.99727 * 15 14 13 17 17 C 1.38224 * 120.01858 * 179.97438 * 16 15 14 18 18 C 1.38271 * 120.02140 * 0.03879 * 17 16 15 19 19 C 1.38186 * 120.01173 * 359.97438 * 18 17 16 20 20 C 1.38333 * 120.00354 * 279.72644 * 15 14 13 21 21 Cl 1.73602 * 120.01576 * 359.97286 * 20 15 14 22 22 O 1.34662 * 114.14076 * 359.62906 * 13 12 11 23 23 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.94782 * 259.37711 * 11 9 7 25 25 H 1.09003 * 110.94958 * 23.03896 * 11 9 7 26 26 H 1.09005 * 109.47211 * 119.97673 * 14 13 12 27 27 H 1.08997 * 109.47145 * 239.97433 * 14 13 12 28 28 H 1.07997 * 119.99368 * 0.02562 * 16 15 14 29 29 H 1.07993 * 119.98779 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.98815 * 179.97438 * 18 17 16 31 31 H 1.08006 * 120.00426 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6057 -2.5774 -0.8734 11 6 2.2217 -3.7026 0.0871 12 7 1.4912 -4.6196 0.9838 13 6 0.5519 -3.9610 1.5657 14 6 -0.4025 -4.5896 2.5481 15 6 -0.0678 -6.0500 2.7094 16 6 0.6640 -6.4750 3.8024 17 6 0.9706 -7.8146 3.9507 18 6 0.5463 -8.7302 3.0055 19 6 -0.1850 -8.3065 1.9123 20 6 -0.4976 -6.9664 1.7665 21 17 -1.4232 -6.4346 0.3975 22 8 0.4950 -2.6608 1.2198 23 1 -0.4849 0.8401 -0.0004 24 1 2.3706 -4.1535 -0.8940 25 1 3.1742 -3.4047 0.5254 26 1 -0.3145 -4.0880 3.5119 27 1 -1.4229 -4.4894 2.1783 28 1 0.9955 -5.7603 4.5411 29 1 1.5420 -8.1461 4.8051 30 1 0.7866 -9.7767 3.1218 31 1 -0.5168 -9.0219 1.1743 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260767190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:04 Heat of formation + Delta-G solvation = -0.168952 kcal Electronic energy + Delta-G solvation = -17314.515386 eV Core-core repulsion = 14394.158834 eV Total energy + Delta-G solvation = -2920.356552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88096 -39.03546 -36.18182 -33.74104 -32.66312 -31.95615 -30.62499 -29.29834 -26.96624 -24.38533 -22.60590 -21.82693 -21.12338 -18.98694 -16.87911 -16.80583 -15.67003 -15.39208 -15.32935 -14.90570 -14.59923 -13.76721 -13.47908 -13.22594 -13.11259 -12.54627 -12.08071 -11.78499 -11.62700 -11.47077 -11.33227 -11.30504 -11.00088 -10.93783 -10.64684 -10.52247 -9.92210 -9.51796 -8.92661 -8.78393 -8.72763 -8.47351 -7.76548 -6.21631 -4.37658 1.28456 1.36596 2.38857 3.16425 3.23689 3.27940 3.30726 3.68771 4.27601 4.48340 4.75151 4.86632 5.00179 5.12833 5.29999 5.42059 5.49661 5.67516 5.80527 5.92982 5.99651 6.19810 6.29901 6.36991 6.44665 6.54153 6.56148 6.84785 6.92698 7.36721 7.60021 7.68996 8.06468 8.67267 8.99764 9.35518 10.85800 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.005082 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.465626 B = 5508.098458 C = 5795.895795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.185 3.815 10 H 0.049 0.951 11 C 0.000 4.000 12 N -0.565 5.565 13 C 0.291 3.709 14 C -0.015 4.015 15 C -0.045 4.045 16 C -0.096 4.096 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.012 4.012 21 Cl -0.066 7.066 22 O -0.328 6.328 23 H 0.267 0.733 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -14.147 6.477 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.131 3.869 10 H 0.066 0.934 11 C -0.130 4.130 12 N -0.305 5.305 13 C 0.065 3.935 14 C -0.053 4.053 15 C -0.046 4.046 16 C -0.114 4.114 17 C -0.136 4.136 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.038 4.038 21 Cl -0.037 7.037 22 O -0.230 6.230 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.006 -14.553 6.332 15.997 hybrid contribution 0.370 1.716 -0.435 1.809 sum -1.636 -12.837 5.897 14.221 Atomic orbital electron populations 1.70013 1.06222 1.27422 1.45905 1.25153 0.94903 0.99796 0.93038 0.86519 0.79644 0.82104 0.78975 1.19785 1.20912 1.19841 1.20967 0.92868 0.89230 1.54116 0.91248 1.21686 0.88171 0.94433 0.82597 0.93352 1.23958 0.99375 0.92504 0.97115 1.74582 1.09256 1.31129 1.15521 1.25017 0.92039 0.83779 0.92657 1.19163 0.97839 0.90096 0.98194 1.19301 0.97348 0.94064 0.93898 1.20973 0.97104 0.96071 0.97236 1.21129 1.00002 0.93148 0.99368 1.21007 0.98416 0.99710 0.94188 1.20954 0.99644 0.93750 0.98867 1.20742 0.99024 0.93860 0.90220 1.98377 1.71600 1.90704 1.43019 1.87393 1.71030 1.21383 1.43156 0.92369 0.90910 0.90857 0.88112 0.87902 0.85297 0.85759 0.85616 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.09 13.10 55.43 0.73 -24.37 16 2 C 0.08 2.19 5.44 -17.82 -0.10 2.09 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -15.00 8.83 -34.44 -0.30 -15.31 16 8 H 0.07 1.88 7.64 -52.49 -0.40 1.48 16 9 C 0.19 4.95 3.52 -26.91 -0.09 4.86 16 10 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 11 C 0.00 0.00 7.68 -2.47 -0.02 -0.02 16 12 N -0.56 -12.55 10.74 -56.97 -0.61 -13.16 16 13 C 0.29 6.37 7.47 -13.62 -0.10 6.27 16 14 C -0.01 -0.25 5.44 -29.04 -0.16 -0.41 16 15 C -0.05 -0.69 4.47 -104.59 -0.47 -1.15 16 16 C -0.10 -1.25 9.67 -39.59 -0.38 -1.63 16 17 C -0.12 -1.32 10.05 -39.57 -0.40 -1.72 16 18 C -0.11 -1.26 10.05 -39.59 -0.40 -1.66 16 19 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 20 C -0.01 -0.18 6.25 -39.50 -0.25 -0.42 16 21 Cl -0.07 -1.05 27.34 -51.86 -1.42 -2.46 16 22 O -0.33 -8.68 10.65 -15.75 -0.17 -8.85 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 25 H 0.07 1.71 7.79 -51.93 -0.40 1.30 16 26 H 0.10 1.48 8.00 -51.93 -0.42 1.06 16 27 H 0.10 1.67 7.34 -51.93 -0.38 1.29 16 28 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -31.34 288.95 -8.47 -39.81 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.27 Total: -0.35 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.06 Total: -10.92 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.11 Total: -37.53 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.17 Total: -8.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.34 -8.47 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.639 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds