Wall clock time and date at job start Mon Mar 30 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48500 * 109.47299 * 239.99695 * 3 2 1 5 5 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99509 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.94367 * 59.30115 * 9 7 2 11 11 C 1.54842 * 111.07818 * 183.37187 * 9 7 2 12 12 N 1.47600 * 101.89597 * 141.22617 * 11 9 7 13 13 C 1.28642 * 108.54662 * 345.04683 * 12 11 9 14 14 C 1.50697 * 122.93830 * 179.58928 * 13 12 11 15 15 C 1.50694 * 109.47343 * 359.97438 * 14 13 12 16 16 C 1.38227 * 120.01186 * 99.99727 * 15 14 13 17 17 C 1.38224 * 120.01858 * 179.97438 * 16 15 14 18 18 C 1.38271 * 120.02140 * 0.03879 * 17 16 15 19 19 C 1.38186 * 120.01173 * 359.97438 * 18 17 16 20 20 C 1.38333 * 120.00354 * 279.72644 * 15 14 13 21 21 Cl 1.73602 * 120.01576 * 359.97286 * 20 15 14 22 22 O 1.34662 * 114.14076 * 359.62906 * 13 12 11 23 23 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.94782 * 259.37711 * 11 9 7 25 25 H 1.09003 * 110.94958 * 23.03896 * 11 9 7 26 26 H 1.09005 * 109.47211 * 119.97673 * 14 13 12 27 27 H 1.08997 * 109.47145 * 239.97433 * 14 13 12 28 28 H 1.07997 * 119.99368 * 0.02562 * 16 15 14 29 29 H 1.07993 * 119.98779 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.98815 * 179.97438 * 18 17 16 31 31 H 1.08006 * 120.00426 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6057 -2.5774 -0.8734 11 6 2.2217 -3.7026 0.0871 12 7 1.4912 -4.6196 0.9838 13 6 0.5519 -3.9610 1.5657 14 6 -0.4025 -4.5896 2.5481 15 6 -0.0678 -6.0500 2.7094 16 6 0.6640 -6.4750 3.8024 17 6 0.9706 -7.8146 3.9507 18 6 0.5463 -8.7302 3.0055 19 6 -0.1850 -8.3065 1.9123 20 6 -0.4976 -6.9664 1.7665 21 17 -1.4232 -6.4346 0.3975 22 8 0.4950 -2.6608 1.2198 23 1 -0.4849 0.8401 -0.0004 24 1 2.3706 -4.1535 -0.8940 25 1 3.1742 -3.4047 0.5254 26 1 -0.3145 -4.0880 3.5119 27 1 -1.4229 -4.4894 2.1783 28 1 0.9955 -5.7603 4.5411 29 1 1.5420 -8.1461 4.8051 30 1 0.7866 -9.7767 3.1218 31 1 -0.5168 -9.0219 1.1743 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260767190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:04 Heat of formation + Delta-G solvation = -21.350767 kcal Electronic energy + Delta-G solvation = -17315.433898 eV Core-core repulsion = 14394.158834 eV Total energy + Delta-G solvation = -2921.275064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65209 -40.17209 -37.31438 -35.37496 -34.50631 -33.73057 -31.60005 -30.99261 -28.46878 -26.29186 -23.58955 -23.25566 -22.82194 -20.63883 -18.94464 -17.86064 -17.21374 -17.06341 -16.75368 -16.43979 -16.14038 -15.33317 -14.69617 -14.46196 -14.33476 -14.07915 -13.77088 -13.62390 -13.35342 -12.99024 -12.80238 -12.54841 -12.46941 -12.38031 -12.18912 -11.86492 -11.66516 -11.47807 -10.83747 -10.78493 -9.78805 -9.69787 -9.52396 -8.32477 -6.57917 0.28243 0.39782 1.28901 1.38195 1.39944 1.43865 1.50503 2.32320 2.55066 2.87902 3.24416 3.40036 3.85518 3.86984 4.15372 4.18823 4.34415 4.44115 4.47868 4.57054 4.66449 4.67410 4.79426 4.98967 5.05719 5.32020 5.37262 5.49761 5.54132 5.55961 5.73233 5.97345 6.02680 6.55197 7.10594 7.22145 8.76050 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.005082 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.465626 B = 5508.098458 C = 5795.895795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.180 3.820 10 H 0.016 0.984 11 C 0.007 3.993 12 N -0.560 5.560 13 C 0.287 3.713 14 C -0.011 4.011 15 C -0.068 4.068 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.032 4.032 21 Cl -0.088 7.088 22 O -0.356 6.356 23 H 0.270 0.730 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -15.283 7.938 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.126 3.874 10 H 0.034 0.966 11 C -0.122 4.122 12 N -0.299 5.299 13 C 0.061 3.939 14 C -0.049 4.049 15 C -0.069 4.069 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.058 4.058 21 Cl -0.060 7.060 22 O -0.259 6.259 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.160 0.840 29 H 0.176 0.824 30 H 0.179 0.821 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.726 -15.720 7.793 17.561 hybrid contribution -0.038 1.922 -0.840 2.097 sum -0.764 -13.798 6.953 15.470 Atomic orbital electron populations 1.70141 1.07949 1.28533 1.46847 1.26090 0.95762 1.03668 0.92211 0.85367 0.78303 0.77111 0.79429 1.18569 1.20265 1.19187 1.21313 0.93330 0.90272 1.54734 0.90782 1.21527 0.88272 0.95747 0.81901 0.96598 1.23870 0.98711 0.91519 0.98130 1.74583 1.09517 1.30341 1.15430 1.25872 0.92643 0.82209 0.93127 1.19299 0.96432 0.91572 0.97617 1.19262 0.99452 0.92776 0.95457 1.21245 0.96540 0.97563 0.96765 1.21553 0.99178 0.92206 1.00194 1.21469 0.96535 1.01524 0.92848 1.21254 0.99739 0.92976 0.99987 1.20976 0.99952 0.95041 0.89868 1.98365 1.72306 1.91027 1.44255 1.87311 1.71422 1.24130 1.43056 0.92143 0.89746 0.90710 0.86075 0.87937 0.83981 0.82431 0.82077 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.59 13.10 21.45 0.28 -53.31 16 2 C 0.03 1.49 5.44 84.65 0.46 1.95 16 3 Si 0.98 43.10 29.54 68.60 2.03 45.13 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.56 -31.95 8.83 25.60 0.23 -31.72 16 8 H 0.07 4.03 7.64 -2.91 -0.02 4.01 16 9 C 0.18 9.95 3.52 30.48 0.11 10.05 16 10 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 11 C 0.01 0.34 7.68 86.80 0.67 1.01 16 12 N -0.56 -24.89 10.74 -449.35 -4.82 -29.71 16 13 C 0.29 12.71 7.47 88.57 0.66 13.37 16 14 C -0.01 -0.38 5.44 29.10 0.16 -0.22 16 15 C -0.07 -2.01 4.47 -19.85 -0.09 -2.10 16 16 C -0.10 -2.44 9.67 22.26 0.22 -2.22 16 17 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 18 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 19 C -0.12 -2.79 9.83 22.29 0.22 -2.57 16 20 C -0.03 -0.93 6.25 22.32 0.14 -0.79 16 21 Cl -0.09 -2.84 27.34 -2.72 -0.07 -2.92 16 22 O -0.36 -19.41 10.65 -79.27 -0.84 -20.25 16 23 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 24 H 0.08 3.71 8.14 -2.39 -0.02 3.70 16 25 H 0.07 3.48 7.79 -2.39 -0.02 3.47 16 26 H 0.12 3.48 8.00 -2.38 -0.02 3.46 16 27 H 0.10 3.41 7.34 -2.39 -0.02 3.39 16 28 H 0.14 2.89 8.04 -2.91 -0.02 2.86 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.60 288.95 0.92 -67.69 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.14 Total: 10.20 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.21 Total: -16.82 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -4.54 Total: -83.03 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.84 Total: -20.25 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.92 kcal Total: -68.60 0.92 -67.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.336 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds