Wall clock time and date at job start Mon Mar 30 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00281 * 2 1 4 4 H 1.48496 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47222 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47276 * 59.99878 * 3 2 1 7 7 C 1.37878 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99941 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.94818 * 304.06940 * 9 7 2 11 11 C 1.54857 * 111.07660 * 179.97438 * 9 7 2 12 12 N 1.47601 * 101.89259 * 218.73404 * 11 9 7 13 13 C 1.28637 * 108.54673 * 14.95234 * 12 11 9 14 14 C 1.50699 * 122.93328 * 180.40506 * 13 12 11 15 15 C 1.50700 * 109.47698 * 0.02562 * 14 13 12 16 16 C 1.38238 * 120.00734 * 99.99573 * 15 14 13 17 17 C 1.38217 * 120.01212 * 180.02562 * 16 15 14 18 18 C 1.38268 * 120.02717 * 0.02562 * 17 16 15 19 19 C 1.38189 * 120.01053 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00395 * 279.72870 * 15 14 13 21 21 Cl 1.73595 * 120.01442 * 359.96956 * 20 15 14 22 22 O 1.34593 * 114.12735 * 0.40725 * 13 12 11 23 23 H 0.97005 * 120.00069 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.94127 * 336.88775 * 11 9 7 25 25 H 1.08997 * 110.94244 * 100.58508 * 11 9 7 26 26 H 1.09006 * 109.46916 * 120.00411 * 14 13 12 27 27 H 1.08997 * 109.47187 * 240.00205 * 14 13 12 28 28 H 1.07998 * 119.99412 * 0.02562 * 16 15 14 29 29 H 1.07996 * 119.98792 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.99076 * 179.97438 * 18 17 16 31 31 H 1.08007 * 120.00444 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.5619 -2.5521 0.8412 11 6 2.2238 -3.7039 -0.0028 12 7 1.5384 -4.6476 -0.9073 13 6 0.6298 -4.0071 -1.5547 14 6 -0.2746 -4.6653 -2.5646 15 6 0.0667 -6.1296 -2.6657 16 6 -0.7032 -7.0664 -2.0020 17 6 -0.3899 -8.4095 -2.0942 18 6 0.6939 -8.8168 -2.8500 19 6 1.4643 -7.8812 -3.5139 20 6 1.1473 -6.5370 -3.4273 21 17 2.1100 -5.3619 -4.2673 22 8 0.5576 -2.6978 -1.2512 23 1 -0.4850 0.8401 -0.0004 24 1 3.1970 -3.4185 -0.4021 25 1 2.3231 -4.1254 0.9975 26 1 -1.3122 -4.5554 -2.2491 27 1 -0.1384 -4.1922 -3.5370 28 1 -1.5497 -6.7488 -1.4112 29 1 -0.9915 -9.1410 -1.5752 30 1 0.9384 -9.8663 -2.9213 31 1 2.3107 -8.1995 -4.1045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260767196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:05 Heat of formation + Delta-G solvation = -0.557363 kcal Electronic energy + Delta-G solvation = -17300.463585 eV Core-core repulsion = 14380.090190 eV Total energy + Delta-G solvation = -2920.373395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.89130 -39.04075 -36.17625 -33.74476 -32.68410 -31.96299 -30.62650 -29.30222 -26.97022 -24.39353 -22.60275 -21.83035 -21.13694 -18.99038 -16.89189 -16.81790 -15.64856 -15.44930 -15.30987 -14.91425 -14.60682 -13.73974 -13.56172 -13.20411 -13.05667 -12.59578 -12.05330 -11.79289 -11.64766 -11.47275 -11.33279 -11.29273 -11.03086 -10.95041 -10.61545 -10.51752 -9.92770 -9.50592 -8.93196 -8.78563 -8.74846 -8.47249 -7.77129 -6.23931 -4.39155 1.28511 1.36333 2.39414 3.16129 3.20983 3.28473 3.33107 3.68529 4.26833 4.46298 4.74742 4.86803 4.99982 5.11863 5.30684 5.40545 5.49936 5.70140 5.78102 5.93039 5.99051 6.18867 6.29863 6.36553 6.44739 6.52961 6.57106 6.84812 6.92850 7.35472 7.59780 7.68206 8.06203 8.67743 8.99001 9.34283 10.83800 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.005131 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.267196 B = 5456.015418 C = 5758.422136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.183 3.817 10 H 0.051 0.949 11 C 0.000 4.000 12 N -0.565 5.565 13 C 0.291 3.709 14 C -0.015 4.015 15 C -0.045 4.045 16 C -0.096 4.096 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.011 4.011 21 Cl -0.066 7.066 22 O -0.331 6.331 23 H 0.266 0.734 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 -14.308 -6.412 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.129 3.871 10 H 0.069 0.931 11 C -0.129 4.129 12 N -0.305 5.305 13 C 0.065 3.935 14 C -0.053 4.053 15 C -0.046 4.046 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.038 4.038 21 Cl -0.037 7.037 22 O -0.233 6.233 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.375 -14.657 -6.441 16.069 hybrid contribution 0.500 1.791 0.205 1.871 sum -0.874 -12.866 -6.236 14.325 Atomic orbital electron populations 1.70017 1.06261 1.27275 1.46219 1.25161 0.94910 0.99881 0.92975 0.86397 0.80248 0.82713 0.77879 1.19352 1.20550 1.20564 1.21048 0.92965 0.89162 1.53566 0.91189 1.21729 0.89292 0.94383 0.81697 0.93125 1.23955 0.99715 0.92176 0.97100 1.74583 1.10340 1.31295 1.14259 1.24985 0.91803 0.83804 0.92864 1.19168 0.98178 0.89928 0.98038 1.19304 0.94316 0.95049 0.95979 1.20975 0.99700 0.92523 0.98254 1.21125 0.97628 0.95790 0.99110 1.21008 0.95502 0.99152 0.97655 1.20957 1.00430 0.90927 1.00915 1.20736 0.94128 0.90246 0.98653 1.98376 1.70652 1.58423 1.76204 1.87374 1.73335 1.20657 1.41924 0.92449 0.90826 0.90902 0.88037 0.87985 0.85297 0.85754 0.85616 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.05 13.23 55.43 0.73 -24.31 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.90 8.83 -34.44 -0.30 -15.21 16 8 H 0.07 1.92 7.61 -52.49 -0.40 1.52 16 9 C 0.18 4.87 3.48 -26.90 -0.09 4.78 16 10 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 11 C 0.00 0.00 7.68 -2.46 -0.02 -0.02 16 12 N -0.56 -12.53 10.74 -56.98 -0.61 -13.14 16 13 C 0.29 6.36 7.47 -13.62 -0.10 6.26 16 14 C -0.02 -0.25 5.44 -29.04 -0.16 -0.41 16 15 C -0.05 -0.69 4.47 -104.59 -0.47 -1.16 16 16 C -0.10 -1.25 9.67 -39.59 -0.38 -1.64 16 17 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 18 C -0.11 -1.26 10.05 -39.59 -0.40 -1.66 16 19 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 20 C -0.01 -0.16 6.25 -39.50 -0.25 -0.41 16 21 Cl -0.07 -1.04 27.34 -51.86 -1.42 -2.46 16 22 O -0.33 -8.74 10.82 -15.56 -0.17 -8.91 16 23 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.07 1.74 7.77 -51.93 -0.40 1.33 16 25 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.10 1.49 8.00 -51.93 -0.42 1.07 16 27 H 0.10 1.64 7.34 -51.93 -0.38 1.26 16 28 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -31.36 289.18 -8.45 -39.81 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.27 Total: -0.44 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.06 Total: -10.93 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.12 Total: -37.46 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.17 Total: -8.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.36 -8.45 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.256 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds