Wall clock time and date at job start Mon Mar 30 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00281 * 2 1 4 4 H 1.48496 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47222 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47276 * 59.99878 * 3 2 1 7 7 C 1.37878 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99941 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.94818 * 304.06940 * 9 7 2 11 11 C 1.54857 * 111.07660 * 179.97438 * 9 7 2 12 12 N 1.47601 * 101.89259 * 218.73404 * 11 9 7 13 13 C 1.28637 * 108.54673 * 14.95234 * 12 11 9 14 14 C 1.50699 * 122.93328 * 180.40506 * 13 12 11 15 15 C 1.50700 * 109.47698 * 0.02562 * 14 13 12 16 16 C 1.38238 * 120.00734 * 99.99573 * 15 14 13 17 17 C 1.38217 * 120.01212 * 180.02562 * 16 15 14 18 18 C 1.38268 * 120.02717 * 0.02562 * 17 16 15 19 19 C 1.38189 * 120.01053 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00395 * 279.72870 * 15 14 13 21 21 Cl 1.73595 * 120.01442 * 359.96956 * 20 15 14 22 22 O 1.34593 * 114.12735 * 0.40725 * 13 12 11 23 23 H 0.97005 * 120.00069 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.94127 * 336.88775 * 11 9 7 25 25 H 1.08997 * 110.94244 * 100.58508 * 11 9 7 26 26 H 1.09006 * 109.46916 * 120.00411 * 14 13 12 27 27 H 1.08997 * 109.47187 * 240.00205 * 14 13 12 28 28 H 1.07998 * 119.99412 * 0.02562 * 16 15 14 29 29 H 1.07996 * 119.98792 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.99076 * 179.97438 * 18 17 16 31 31 H 1.08007 * 120.00444 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.5619 -2.5521 0.8412 11 6 2.2238 -3.7039 -0.0028 12 7 1.5384 -4.6476 -0.9073 13 6 0.6298 -4.0071 -1.5547 14 6 -0.2746 -4.6653 -2.5646 15 6 0.0667 -6.1296 -2.6657 16 6 -0.7032 -7.0664 -2.0020 17 6 -0.3899 -8.4095 -2.0942 18 6 0.6939 -8.8168 -2.8500 19 6 1.4643 -7.8812 -3.5139 20 6 1.1473 -6.5370 -3.4273 21 17 2.1100 -5.3619 -4.2673 22 8 0.5576 -2.6978 -1.2512 23 1 -0.4850 0.8401 -0.0004 24 1 3.1970 -3.4185 -0.4021 25 1 2.3231 -4.1254 0.9975 26 1 -1.3122 -4.5554 -2.2491 27 1 -0.1384 -4.1922 -3.5370 28 1 -1.5497 -6.7488 -1.4112 29 1 -0.9915 -9.1410 -1.5752 30 1 0.9384 -9.8663 -2.9213 31 1 2.3107 -8.1995 -4.1045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260767196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:05 Heat of formation + Delta-G solvation = -21.722223 kcal Electronic energy + Delta-G solvation = -17301.381362 eV Core-core repulsion = 14380.090190 eV Total energy + Delta-G solvation = -2921.291172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66173 -40.17168 -37.30242 -35.38235 -34.52286 -33.73185 -31.60111 -30.99106 -28.47099 -26.29755 -23.57233 -23.27877 -22.82095 -20.63817 -18.97030 -17.85917 -17.21842 -17.07668 -16.74425 -16.44760 -16.14753 -15.35206 -14.70627 -14.44310 -14.24679 -14.17985 -13.72635 -13.62917 -13.38443 -12.99291 -12.86023 -12.55006 -12.43265 -12.36902 -12.18379 -11.87426 -11.62703 -11.49099 -10.86515 -10.78611 -9.78878 -9.69324 -9.52271 -8.34925 -6.59282 0.28539 0.39642 1.29870 1.36408 1.37426 1.43263 1.51852 2.30926 2.53889 2.86483 3.23970 3.40569 3.84771 3.88695 4.15630 4.19052 4.33142 4.44094 4.47970 4.57260 4.65775 4.68341 4.79569 4.99103 5.05876 5.31627 5.37684 5.49866 5.53624 5.55893 5.73133 5.97342 6.03074 6.54888 7.10593 7.20732 8.74153 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.005131 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.267196 B = 5456.015418 C = 5758.422136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.178 3.822 10 H 0.025 0.975 11 C 0.007 3.993 12 N -0.560 5.560 13 C 0.287 3.713 14 C -0.012 4.012 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.031 4.031 21 Cl -0.087 7.087 22 O -0.360 6.360 23 H 0.270 0.730 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -15.838 -6.532 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.124 3.876 10 H 0.042 0.958 11 C -0.122 4.122 12 N -0.299 5.299 13 C 0.062 3.938 14 C -0.049 4.049 15 C -0.070 4.070 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.057 4.057 21 Cl -0.058 7.058 22 O -0.263 6.263 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.159 0.841 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.260 -16.216 -6.560 17.538 hybrid contribution 0.414 2.109 0.240 2.162 sum -0.846 -14.107 -6.320 15.481 Atomic orbital electron populations 1.70123 1.07850 1.28484 1.47023 1.26059 0.95784 1.03589 0.92185 0.85289 0.78986 0.77860 0.78226 1.18638 1.20168 1.19343 1.21357 0.93239 0.90379 1.54339 0.91172 1.21581 0.89339 0.95493 0.81198 0.95767 1.23867 0.98775 0.91312 0.98290 1.74589 1.10521 1.30531 1.14256 1.25840 0.92242 0.82259 0.93421 1.19306 0.97996 0.91097 0.96544 1.19264 0.95679 0.94142 0.97891 1.21243 0.99824 0.93219 0.97954 1.21545 0.97660 0.95519 0.98442 1.21468 0.94429 1.00566 0.95913 1.21259 1.01243 0.90190 1.01269 1.20964 0.94384 0.90884 0.99479 1.98363 1.71238 1.59467 1.76725 1.87291 1.73733 1.23428 1.41838 0.92054 0.91298 0.89344 0.86163 0.87807 0.84080 0.82476 0.82084 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.15 13.23 21.45 0.28 -52.87 16 2 C 0.03 1.55 5.46 84.66 0.46 2.02 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.56 -31.89 8.83 25.60 0.23 -31.66 16 8 H 0.07 3.90 7.61 -2.91 -0.02 3.88 16 9 C 0.18 9.77 3.48 30.48 0.11 9.88 16 10 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 11 C 0.01 0.33 7.68 86.80 0.67 1.00 16 12 N -0.56 -24.86 10.74 -449.43 -4.83 -29.68 16 13 C 0.29 12.70 7.47 88.58 0.66 13.37 16 14 C -0.01 -0.39 5.44 29.10 0.16 -0.23 16 15 C -0.07 -2.02 4.47 -19.84 -0.09 -2.10 16 16 C -0.10 -2.48 9.67 22.26 0.22 -2.26 16 17 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 18 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 19 C -0.12 -2.78 9.83 22.29 0.22 -2.56 16 20 C -0.03 -0.89 6.25 22.32 0.14 -0.75 16 21 Cl -0.09 -2.75 27.34 -2.72 -0.07 -2.83 16 22 O -0.36 -19.52 10.82 -78.58 -0.85 -20.37 16 23 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 24 H 0.07 3.29 7.77 -2.39 -0.02 3.27 16 25 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 26 H 0.12 3.47 8.00 -2.38 -0.02 3.45 16 27 H 0.10 3.39 7.34 -2.39 -0.02 3.37 16 28 H 0.14 2.90 8.04 -2.91 -0.02 2.88 16 29 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -68.32 289.18 0.91 -67.40 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.14 Total: 9.85 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 3.21 Total: -16.90 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -4.54 Total: -82.55 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.85 Total: -20.37 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.07 Total: -2.83 kcal Total: -68.32 0.91 -67.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.683 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds