Wall clock time and date at job start Mon Mar 30 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00227 * 2 1 4 4 N 1.34775 * 120.00295 * 179.97438 * 2 1 3 5 5 C 1.47170 * 121.06316 * 359.82468 * 4 2 1 6 6 C 1.51554 * 107.67576 * 223.58294 * 5 4 2 7 7 S 1.75753 * 125.34599 * 169.78225 * 6 5 4 8 8 C 1.75734 * 91.04691 * 179.60950 * 7 6 5 9 9 C 1.32893 * 109.58135 * 0.07284 * 8 7 6 10 10 C 1.50700 * 122.12304 * 180.02562 * 9 8 7 11 11 C 1.34639 * 124.56000 * 349.54539 * 6 5 4 12 12 C 1.52249 * 123.14318 * 0.48489 * 11 6 5 13 13 H 1.08995 * 109.52069 * 100.74870 * 12 11 6 14 14 C 1.50699 * 109.52442 * 220.93234 * 12 11 6 15 15 H 1.08004 * 119.99955 * 5.28479 * 14 12 11 16 16 C 1.37876 * 120.00472 * 185.29360 * 14 12 11 17 17 N 1.31515 * 119.99582 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00341 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46647 * 89.99806 * 18 16 14 20 20 H 1.48495 * 109.47239 * 209.99481 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00387 * 18 16 14 22 22 C 1.47070 * 121.09568 * 180.02562 * 4 2 1 23 23 H 1.08996 * 109.46915 * 270.00192 * 1 2 3 24 24 H 1.08999 * 109.46650 * 29.99788 * 1 2 3 25 25 H 1.08993 * 109.47101 * 150.00185 * 1 2 3 26 26 H 1.09011 * 109.70178 * 104.08608 * 5 4 2 27 27 H 1.09000 * 109.94341 * 343.22041 * 5 4 2 28 28 H 1.08007 * 125.20952 * 180.02562 * 8 7 6 29 29 H 1.08991 * 109.47733 * 237.95725 * 10 9 8 30 30 H 1.08998 * 109.46767 * 357.96250 * 10 9 8 31 31 H 1.09004 * 109.46868 * 117.95391 * 10 9 8 32 32 H 0.97000 * 119.99938 * 180.02562 * 17 16 14 33 33 H 1.09007 * 109.55589 * 355.28619 * 22 4 2 34 34 H 1.09005 * 109.55755 * 235.07984 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4689 -2.4551 0.0050 6 6 2.1644 -3.3620 1.0004 7 16 1.5553 -4.9120 1.5618 8 6 2.9702 -5.1356 2.5799 9 6 3.7804 -4.0900 2.4523 10 6 5.0831 -3.9894 3.2033 11 6 3.3490 -3.0927 1.5809 12 6 4.1385 -1.8195 1.3098 13 1 3.9862 -1.1154 2.1278 14 6 5.6042 -2.1505 1.1950 15 1 5.9287 -3.1803 1.2199 16 6 6.5309 -1.1388 1.0583 17 7 6.1357 0.1151 1.0277 18 14 8.3477 -1.5492 0.9167 19 1 8.7039 -1.7315 -0.5135 20 1 9.1519 -0.4401 1.4896 21 1 8.6316 -2.8025 1.6611 22 6 3.6514 -1.1952 0.0011 23 1 -0.3633 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 1.5071 -2.8996 -0.9897 27 1 0.4313 -2.3053 0.3032 28 1 3.1529 -5.9914 3.2129 29 1 5.0840 -3.0837 3.8096 30 1 5.1979 -4.8595 3.8496 31 1 5.9096 -3.9524 2.4936 32 1 6.7876 0.8269 0.9312 33 1 4.0357 -0.1786 -0.0834 34 1 4.0053 -1.7902 -0.8409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:12 Heat of formation + Delta-G solvation = 0.753933 kcal Electronic energy + Delta-G solvation = -18419.142630 eV Core-core repulsion = 15636.702898 eV Total energy + Delta-G solvation = -2782.439732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55786 -37.96200 -35.15639 -33.42376 -30.86805 -30.26043 -28.94691 -27.51943 -24.98756 -24.37105 -22.08887 -20.30966 -18.96293 -17.36478 -16.83102 -16.17174 -15.75743 -15.41203 -14.86155 -14.48849 -13.83222 -13.68429 -13.03897 -12.87467 -12.67568 -12.34932 -12.20828 -12.04521 -11.86642 -11.66674 -11.33114 -11.16723 -10.98428 -10.72763 -10.60333 -10.51071 -10.06057 -9.53299 -9.23732 -8.98953 -8.60678 -7.96078 -7.85676 -7.50067 -6.09604 -4.16220 1.58016 2.13609 2.50999 3.21448 3.26141 3.33390 3.34388 3.42034 3.74137 4.36147 5.02538 5.21346 5.24016 5.34432 5.43466 5.53904 5.61619 5.74448 5.95285 6.02157 6.14103 6.24381 6.49457 6.55836 6.64960 6.82722 6.87025 7.07892 7.19370 7.26069 7.53576 7.68699 7.87602 8.15190 8.23999 8.79315 8.85895 9.47250 10.97438 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.010099 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.245181 B = 2771.785175 C = 4406.476015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.506 3.494 3 O -0.542 6.542 4 N -0.610 5.610 5 C 0.191 3.809 6 C -0.231 4.231 7 S 0.039 5.961 8 C -0.231 4.231 9 C -0.067 4.067 10 C -0.096 4.096 11 C -0.041 4.041 12 C 0.094 3.906 13 H 0.050 0.950 14 C -0.520 4.520 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.879 5.879 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.117 3.883 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -7.721 0.078 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.419 6.419 4 N -0.344 5.344 5 C 0.065 3.935 6 C -0.348 4.348 7 S 0.303 5.697 8 C -0.366 4.366 9 C -0.079 4.079 10 C -0.154 4.154 11 C -0.053 4.053 12 C 0.073 3.927 13 H 0.068 0.932 14 C -0.558 4.558 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.003 4.003 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.288 -7.840 -0.233 12.936 hybrid contribution 2.124 0.353 0.259 2.168 sum -8.164 -7.486 0.026 11.077 Atomic orbital electron populations 1.21958 0.93211 1.04049 1.04224 1.20599 0.89984 0.83523 0.76528 1.90732 1.70528 1.30716 1.49938 1.48580 1.09270 1.04233 1.72305 1.20070 0.94680 0.82628 0.96084 1.24721 1.01527 0.99900 1.08606 1.83536 1.24662 1.17820 1.43708 1.25015 0.99004 1.04179 1.08378 1.19028 0.97820 0.93006 0.98059 1.20884 0.94636 1.00499 0.99402 1.20283 0.92714 0.98356 0.93926 1.18142 0.93122 0.87289 0.94133 0.93227 1.21136 0.89444 0.93488 1.51764 0.90894 1.25021 0.98981 0.95000 0.94816 1.69941 1.34410 0.98823 1.48382 0.86598 0.85032 0.78106 0.78368 1.20617 1.21166 1.19710 1.22178 0.74156 1.05089 0.98915 0.89355 0.89428 0.90568 0.90891 0.89662 0.82749 0.91090 0.94296 0.88390 0.92506 0.86703 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.39 36.01 0.34 -1.95 16 2 C 0.51 9.88 7.82 -10.99 -0.09 9.79 16 3 O -0.54 -13.21 16.55 5.55 0.09 -13.12 16 4 N -0.61 -12.06 2.95 -173.57 -0.51 -12.58 16 5 C 0.19 3.06 6.37 -4.41 -0.03 3.03 16 6 C -0.23 -4.20 6.44 -35.16 -0.23 -4.43 16 7 S 0.04 0.59 23.32 -107.50 -2.51 -1.92 16 8 C -0.23 -3.81 10.86 28.89 0.31 -3.49 16 9 C -0.07 -1.28 5.59 -106.08 -0.59 -1.87 16 10 C -0.10 -1.75 8.63 36.01 0.31 -1.44 16 11 C -0.04 -0.86 5.43 -104.74 -0.57 -1.43 16 12 C 0.09 2.28 2.35 -92.18 -0.22 2.07 16 13 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 14 C -0.52 -13.10 6.71 -34.44 -0.23 -13.33 16 15 H 0.07 1.79 4.96 -52.48 -0.26 1.53 16 16 C 0.07 1.71 5.33 -17.82 -0.10 1.62 16 17 N -0.88 -24.60 11.92 55.43 0.66 -23.94 16 18 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.12 2.77 5.32 -3.75 -0.02 2.75 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 26 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 27 H 0.09 1.10 6.01 -51.93 -0.31 0.79 16 28 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 31 H 0.10 1.95 5.14 -51.93 -0.27 1.68 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.11 3.15 5.81 -51.93 -0.30 2.84 16 34 H 0.05 1.25 8.08 -51.93 -0.42 0.83 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -29.76 287.38 -8.04 -37.80 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.98 Total: 2.84 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.10 Total: -8.67 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.15 Total: -36.51 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.51 Total: -1.92 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.76 -8.04 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.552 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds