Wall clock time and date at job start Mon Mar 30 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00122 * 2 1 4 4 N 1.34776 * 120.00216 * 180.02562 * 2 1 3 5 5 C 1.47195 * 121.08308 * 354.50628 * 4 2 1 6 6 C 1.51562 * 107.60114 * 223.62699 * 5 4 2 7 7 S 1.75755 * 125.33975 * 169.72005 * 6 5 4 8 8 C 1.75737 * 91.04665 * 179.73066 * 7 6 5 9 9 C 1.32905 * 109.57362 * 359.76607 * 8 7 6 10 10 C 1.50707 * 122.11379 * 180.30932 * 9 8 7 11 11 C 1.34631 * 124.56081 * 349.31719 * 6 5 4 12 12 C 1.52252 * 123.14474 * 0.68762 * 11 6 5 13 13 H 1.09001 * 109.51544 * 220.81620 * 12 11 6 14 14 C 1.50694 * 109.52186 * 100.69405 * 12 11 6 15 15 H 1.08000 * 119.99991 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99704 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00265 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99831 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47025 * 59.99820 * 18 16 14 20 20 H 1.48497 * 109.47215 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47142 * 300.00176 * 18 16 14 22 22 C 1.47069 * 121.08619 * 174.49243 * 4 2 1 23 23 H 1.09004 * 109.46905 * 184.85053 * 1 2 3 24 24 H 1.08999 * 109.47389 * 304.84807 * 1 2 3 25 25 H 1.09001 * 109.47322 * 64.84984 * 1 2 3 26 26 H 1.08994 * 109.82816 * 343.15477 * 5 4 2 27 27 H 1.08998 * 109.82789 * 104.10251 * 5 4 2 28 28 H 1.07993 * 125.21046 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.46870 * 90.03172 * 10 9 8 30 30 H 1.08994 * 109.46679 * 210.02378 * 10 9 8 31 31 H 1.08992 * 109.47423 * 330.02733 * 10 9 8 32 32 H 0.97003 * 120.00659 * 179.97438 * 17 16 14 33 33 H 1.09004 * 109.55827 * 355.35906 * 22 4 2 34 34 H 1.08996 * 109.64566 * 235.09729 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4742 -2.4528 0.1196 6 6 2.2500 -3.3126 1.0973 7 16 1.6920 -4.8338 1.7783 8 6 3.1834 -5.0093 2.6911 9 6 3.9804 -3.9746 2.4451 10 6 5.3412 -3.8430 3.0792 11 6 3.4781 -3.0195 1.5645 12 6 4.2399 -1.7612 1.1713 13 1 5.2903 -2.0059 1.0134 14 6 4.1211 -0.7366 2.2700 15 1 3.5555 -0.9640 3.1615 16 6 4.7336 0.4914 2.1365 17 7 5.4219 0.7684 1.0507 18 14 4.5858 1.7618 3.4981 19 1 5.1566 1.2107 4.7534 20 1 5.3292 2.9884 3.1135 21 1 3.1544 2.0959 3.7101 22 6 3.6463 -1.1978 -0.1214 23 1 -0.3633 -1.0240 0.0869 24 1 -0.3634 0.5872 0.8434 25 1 -0.3634 0.4367 -0.9302 26 1 0.4644 -2.2860 0.4942 27 1 1.4324 -2.9439 -0.8526 28 1 3.4181 -5.8339 3.3478 29 1 6.0864 -4.3198 2.4425 30 1 5.5863 -2.7876 3.1976 31 1 5.3352 -4.3264 4.0561 32 1 5.8525 1.6325 0.9565 33 1 4.0202 -0.1870 -0.2844 34 1 3.9315 -1.8321 -0.9607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:14 Heat of formation + Delta-G solvation = 1.395879 kcal Electronic energy + Delta-G solvation = -18676.852610 eV Core-core repulsion = 15894.440715 eV Total energy + Delta-G solvation = -2782.411895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40204 -37.77200 -35.03817 -33.25431 -30.72372 -30.12306 -28.75748 -27.37945 -25.02354 -24.46435 -22.00020 -20.23294 -18.88404 -17.21888 -16.75248 -16.03209 -15.63985 -15.12379 -14.73666 -14.49067 -13.77270 -13.59037 -12.95084 -12.80987 -12.70035 -12.36023 -12.32383 -11.86207 -11.78192 -11.35107 -11.30422 -10.92856 -10.89005 -10.73451 -10.57668 -10.37751 -10.13090 -9.49057 -9.29415 -8.89991 -8.37915 -7.89279 -7.66952 -7.52339 -5.96692 -4.01465 1.58639 2.15636 2.51647 3.36574 3.39309 3.44183 3.49255 3.51549 3.94080 4.52853 5.16018 5.28814 5.35488 5.39175 5.52068 5.66086 5.74855 5.85777 5.94880 6.02227 6.16187 6.18705 6.26790 6.50462 6.69359 6.71838 6.85209 7.07272 7.21106 7.35794 7.59974 7.77972 8.00357 8.29638 8.43201 8.95465 9.10524 9.64058 11.09775 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.010324 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.705327 B = 2711.399449 C = 3815.114962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.527 6.527 4 N -0.593 5.593 5 C 0.189 3.811 6 C -0.223 4.223 7 S 0.039 5.961 8 C -0.229 4.229 9 C -0.077 4.077 10 C -0.099 4.099 11 C -0.040 4.040 12 C 0.092 3.908 13 H 0.049 0.951 14 C -0.503 4.503 15 H 0.051 0.949 16 C 0.079 3.921 17 N -0.881 5.881 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.109 3.891 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.133 0.867 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -9.493 -1.049 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.297 3.703 3 O -0.403 6.403 4 N -0.327 5.327 5 C 0.063 3.937 6 C -0.339 4.339 7 S 0.304 5.696 8 C -0.363 4.363 9 C -0.089 4.089 10 C -0.158 4.158 11 C -0.051 4.051 12 C 0.071 3.929 13 H 0.067 0.933 14 C -0.541 4.541 15 H 0.069 0.931 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.012 4.012 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.749 -9.659 -1.285 12.449 hybrid contribution 0.987 1.209 1.062 1.888 sum -6.762 -8.450 -0.223 10.825 Atomic orbital electron populations 1.22004 0.93843 1.03566 1.04306 1.20375 0.89534 0.83644 0.76698 1.90734 1.70148 1.30503 1.48940 1.48041 1.08684 1.04033 1.71947 1.20114 0.94448 0.83492 0.95622 1.24712 1.00411 1.00148 1.08651 1.83555 1.20853 1.20681 1.44542 1.24974 0.97974 1.04437 1.08937 1.19006 0.98103 0.93559 0.98280 1.20602 0.92072 1.04690 0.98446 1.20203 0.93571 0.96946 0.94428 1.18221 0.93782 0.87054 0.93893 0.93338 1.20658 1.32975 0.98198 1.02290 0.93089 1.24761 0.94513 0.97653 0.95505 1.69710 1.33080 1.22982 1.26110 0.86630 0.78253 0.81022 0.81902 1.20632 1.21305 1.20386 1.22014 0.76701 1.06089 0.96433 0.90834 0.89531 0.89572 0.89584 0.91265 0.82773 0.92006 0.89013 0.92815 0.92673 0.84931 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 10.09 36.00 0.36 -2.27 16 2 C 0.51 10.80 7.81 -10.99 -0.09 10.72 16 3 O -0.53 -13.75 16.57 5.55 0.09 -13.66 16 4 N -0.59 -12.31 2.84 -173.53 -0.49 -12.81 16 5 C 0.19 3.17 6.49 -4.39 -0.03 3.14 16 6 C -0.22 -4.14 6.44 -35.16 -0.23 -4.37 16 7 S 0.04 0.61 23.32 -107.50 -2.51 -1.90 16 8 C -0.23 -3.72 10.93 28.89 0.32 -3.41 16 9 C -0.08 -1.44 5.80 -106.07 -0.61 -2.05 16 10 C -0.10 -1.70 9.67 36.01 0.35 -1.35 16 11 C -0.04 -0.84 5.02 -104.74 -0.53 -1.36 16 12 C 0.09 2.21 1.78 -92.15 -0.16 2.04 16 13 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 14 C -0.50 -13.50 7.72 -34.44 -0.27 -13.76 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.08 2.18 5.25 -17.82 -0.09 2.08 16 17 N -0.88 -24.99 11.34 55.43 0.63 -24.36 16 18 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 22 C 0.11 2.57 5.57 -3.73 -0.02 2.55 16 23 H 0.07 0.89 5.32 -51.93 -0.28 0.62 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.09 1.23 5.57 -51.93 -0.29 0.94 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.82 6.77 -51.93 -0.35 1.47 16 31 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.13 3.63 4.80 -51.93 -0.25 3.38 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -30.88 290.69 -7.99 -38.87 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.07 Total: 0.13 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.00 Total: -8.04 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.14 Total: -37.17 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.90 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.88 -7.99 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.263 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds