Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00122 * 2 1 4 4 N 1.34776 * 120.00216 * 180.02562 * 2 1 3 5 5 C 1.47195 * 121.08308 * 354.50628 * 4 2 1 6 6 C 1.51562 * 107.60114 * 223.62699 * 5 4 2 7 7 S 1.75755 * 125.33975 * 169.72005 * 6 5 4 8 8 C 1.75737 * 91.04665 * 179.73066 * 7 6 5 9 9 C 1.32905 * 109.57362 * 359.76607 * 8 7 6 10 10 C 1.50707 * 122.11379 * 180.30932 * 9 8 7 11 11 C 1.34631 * 124.56081 * 349.31719 * 6 5 4 12 12 C 1.52252 * 123.14474 * 0.68762 * 11 6 5 13 13 H 1.09001 * 109.51544 * 220.81620 * 12 11 6 14 14 C 1.50694 * 109.52186 * 100.69405 * 12 11 6 15 15 H 1.08000 * 119.99991 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99704 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00265 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99831 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47025 * 59.99820 * 18 16 14 20 20 H 1.48497 * 109.47215 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47142 * 300.00176 * 18 16 14 22 22 C 1.47069 * 121.08619 * 174.49243 * 4 2 1 23 23 H 1.09004 * 109.46905 * 184.85053 * 1 2 3 24 24 H 1.08999 * 109.47389 * 304.84807 * 1 2 3 25 25 H 1.09001 * 109.47322 * 64.84984 * 1 2 3 26 26 H 1.08994 * 109.82816 * 343.15477 * 5 4 2 27 27 H 1.08998 * 109.82789 * 104.10251 * 5 4 2 28 28 H 1.07993 * 125.21046 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.46870 * 90.03172 * 10 9 8 30 30 H 1.08994 * 109.46679 * 210.02378 * 10 9 8 31 31 H 1.08992 * 109.47423 * 330.02733 * 10 9 8 32 32 H 0.97003 * 120.00659 * 179.97438 * 17 16 14 33 33 H 1.09004 * 109.55827 * 355.35906 * 22 4 2 34 34 H 1.08996 * 109.64566 * 235.09729 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4742 -2.4528 0.1196 6 6 2.2500 -3.3126 1.0973 7 16 1.6920 -4.8338 1.7783 8 6 3.1834 -5.0093 2.6911 9 6 3.9804 -3.9746 2.4451 10 6 5.3412 -3.8430 3.0792 11 6 3.4781 -3.0195 1.5645 12 6 4.2399 -1.7612 1.1713 13 1 5.2903 -2.0059 1.0134 14 6 4.1211 -0.7366 2.2700 15 1 3.5555 -0.9640 3.1615 16 6 4.7336 0.4914 2.1365 17 7 5.4219 0.7684 1.0507 18 14 4.5858 1.7618 3.4981 19 1 5.1566 1.2107 4.7534 20 1 5.3292 2.9884 3.1135 21 1 3.1544 2.0959 3.7101 22 6 3.6463 -1.1978 -0.1214 23 1 -0.3633 -1.0240 0.0869 24 1 -0.3634 0.5872 0.8434 25 1 -0.3634 0.4367 -0.9302 26 1 0.4644 -2.2860 0.4942 27 1 1.4324 -2.9439 -0.8526 28 1 3.4181 -5.8339 3.3478 29 1 6.0864 -4.3198 2.4425 30 1 5.5863 -2.7876 3.1976 31 1 5.3352 -4.3264 4.0561 32 1 5.8525 1.6325 0.9565 33 1 4.0202 -0.1870 -0.2844 34 1 3.9315 -1.8321 -0.9607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -17.550170 kcal Electronic energy + Delta-G solvation = -18677.674172 eV Core-core repulsion = 15894.440715 eV Total energy + Delta-G solvation = -2783.233457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99036 -39.31289 -36.63603 -35.19964 -32.38208 -31.70525 -30.21159 -28.75101 -26.89502 -26.04249 -23.65106 -21.79517 -20.39331 -18.88067 -18.33894 -17.74367 -17.16408 -16.73462 -16.49081 -16.23489 -15.23460 -15.11690 -14.53306 -14.37547 -14.27010 -13.87977 -13.73485 -13.42377 -13.15898 -12.93409 -12.84966 -12.82286 -12.54208 -12.42378 -12.15644 -12.04407 -11.83090 -11.30648 -11.20575 -10.62354 -10.43705 -9.42802 -9.17947 -8.87659 -8.07469 -6.16731 0.22327 0.83657 1.17684 1.32532 1.37878 1.41301 1.91837 1.93671 2.40223 2.45542 3.24780 3.77529 4.01233 4.07363 4.23381 4.45889 4.55238 4.59094 4.66854 4.70477 4.72990 4.84111 4.90867 4.99669 5.03301 5.16571 5.25180 5.51856 5.60169 5.68412 5.75313 5.93862 6.06883 6.33173 6.78202 6.84489 7.49449 7.50568 8.95524 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.010324 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.705327 B = 2711.399449 C = 3815.114962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.493 3.507 3 O -0.591 6.591 4 N -0.597 5.597 5 C 0.182 3.818 6 C -0.236 4.236 7 S 0.124 5.876 8 C -0.222 4.222 9 C -0.110 4.110 10 C -0.093 4.093 11 C -0.079 4.079 12 C 0.097 3.903 13 H 0.017 0.983 14 C -0.497 4.497 15 H 0.034 0.966 16 C 0.035 3.965 17 N -0.902 5.902 18 Si 0.935 3.065 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.113 3.887 23 H 0.107 0.893 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.187 0.813 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.258 0.742 33 H 0.091 0.909 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 -12.149 -0.542 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.283 3.717 3 O -0.472 6.472 4 N -0.329 5.329 5 C 0.058 3.942 6 C -0.353 4.353 7 S 0.389 5.611 8 C -0.357 4.357 9 C -0.122 4.122 10 C -0.152 4.152 11 C -0.091 4.091 12 C 0.075 3.925 13 H 0.035 0.965 14 C -0.536 4.536 15 H 0.053 0.947 16 C -0.165 4.165 17 N -0.541 5.541 18 Si 0.762 3.238 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.214 1.214 22 C -0.010 4.010 23 H 0.125 0.875 24 H 0.109 0.891 25 H 0.129 0.871 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.204 0.796 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.564 -12.362 -0.765 16.279 hybrid contribution 1.791 1.902 0.889 2.760 sum -8.772 -10.460 0.123 13.652 Atomic orbital electron populations 1.21989 0.88299 1.06102 1.05793 1.21621 0.92175 0.82697 0.75158 1.90702 1.71994 1.32706 1.51768 1.48143 1.07587 1.05933 1.71260 1.20566 0.95102 0.81410 0.97092 1.25103 0.99867 1.02117 1.08215 1.83246 1.18749 1.16893 1.42246 1.25403 0.97906 1.04050 1.08297 1.19067 0.99230 0.94526 0.99391 1.20507 0.92232 1.02442 0.99999 1.19991 0.94993 0.96845 0.97229 1.17898 0.92862 0.88459 0.93246 0.96471 1.20778 1.31658 0.98816 1.02315 0.94724 1.25347 0.94858 0.99295 0.96979 1.69842 1.34141 1.22835 1.27319 0.85977 0.77500 0.79535 0.80779 1.19134 1.21242 1.21352 1.21615 0.79198 1.03695 0.96541 0.87456 0.89084 0.87148 0.86231 0.88199 0.79596 0.91187 0.92899 0.90327 0.93323 0.89042 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 10.09 71.23 0.72 -3.60 16 2 C 0.49 20.69 7.81 87.66 0.68 21.38 16 3 O -0.59 -31.90 16.57 -3.05 -0.05 -31.95 16 4 N -0.60 -24.41 2.84 -821.32 -2.33 -26.74 16 5 C 0.18 5.49 6.49 85.78 0.56 6.05 16 6 C -0.24 -8.13 6.44 25.13 0.16 -7.97 16 7 S 0.12 3.25 23.32 -56.49 -1.32 1.93 16 8 C -0.22 -6.40 10.93 66.65 0.73 -5.67 16 9 C -0.11 -3.98 5.80 -20.79 -0.12 -4.10 16 10 C -0.09 -3.19 9.67 71.24 0.69 -2.50 16 11 C -0.08 -3.27 5.02 -19.94 -0.10 -3.37 16 12 C 0.10 4.84 1.78 -11.79 -0.02 4.81 16 13 H 0.02 0.95 7.83 -2.39 -0.02 0.93 16 14 C -0.50 -27.80 7.72 25.60 0.20 -27.61 16 15 H 0.03 2.00 7.74 -2.91 -0.02 1.98 16 16 C 0.04 2.04 5.25 84.66 0.44 2.49 16 17 N -0.90 -54.13 11.34 21.45 0.24 -53.88 16 18 Si 0.93 47.39 29.54 68.60 2.03 49.42 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 22 C 0.11 5.51 5.57 86.27 0.48 5.99 16 23 H 0.11 2.06 5.32 -2.38 -0.01 2.04 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.12 2.79 5.57 -2.39 -0.01 2.77 16 27 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.19 4.08 8.06 -2.91 -0.02 4.05 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.20 6.77 -2.39 -0.02 2.19 16 31 H 0.08 2.21 8.11 -2.39 -0.02 2.19 16 32 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.09 5.30 4.80 -2.39 -0.01 5.29 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.42 290.69 4.11 -68.32 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.12 Total: 7.00 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.42 Total: -14.09 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.09 Total: -80.62 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.32 Total: 1.93 kcal Total: -72.42 4.11 -68.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.766 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds