Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48494 * 109.47179 * 269.99719 * 3 2 1 5 5 H 1.48498 * 109.47057 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.46882 * 149.99843 * 3 2 1 7 7 C 1.37884 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99914 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99836 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.74096 * 60.68142 * 9 7 2 11 11 C 1.53226 * 109.74533 * 300.00207 * 9 7 2 12 12 O 1.43035 * 109.47865 * 191.22695 * 11 9 7 13 13 C 1.43223 * 113.79348 * 71.19447 * 12 11 9 14 14 C 1.51381 * 108.24309 * 309.60298 * 13 12 11 15 15 S 1.75562 * 126.08347 * 194.84077 * 14 13 12 16 16 C 1.75788 * 91.12190 * 179.97438 * 15 14 13 17 17 N 1.39610 * 125.22796 * 179.97438 * 16 15 14 18 18 C 1.33772 * 109.54618 * 0.02562 * 16 15 14 19 19 C 1.50701 * 122.29657 * 180.02562 * 18 16 15 20 20 C 1.53010 * 117.49651 * 61.99954 * 19 18 16 21 21 C 1.53009 * 60.02729 * 107.50325 * 20 19 18 22 22 C 1.34732 * 123.81600 * 15.11264 * 14 13 12 23 23 H 0.97001 * 120.00863 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47084 * 71.22346 * 11 9 7 25 25 H 1.08998 * 109.46519 * 311.22161 * 11 9 7 26 26 H 1.09000 * 109.71100 * 189.91121 * 13 12 11 27 27 H 1.08998 * 109.74256 * 69.30824 * 13 12 11 28 28 H 0.96998 * 120.00255 * 185.12018 * 17 16 15 29 29 H 0.97004 * 120.00070 * 5.10778 * 17 16 15 30 30 H 1.09001 * 115.56370 * 276.31725 * 19 18 16 31 31 H 1.09002 * 117.49894 * 0.02562 * 20 19 18 32 32 H 1.09000 * 117.49882 * 215.00032 * 20 19 18 33 33 H 1.09001 * 117.49454 * 107.48356 * 21 20 19 34 34 H 1.08999 * 117.49449 * 252.46894 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8794 -0.6914 0.8957 11 6 4.0297 -0.4732 -1.2478 12 8 5.4358 -0.6995 -1.3802 13 6 5.7722 -2.0384 -1.7613 14 6 5.0476 -2.9912 -0.8345 15 16 5.3913 -4.7012 -0.6347 16 6 4.1068 -4.8556 0.5554 17 7 3.7577 -6.0355 1.2150 18 6 3.5145 -3.6691 0.7312 19 6 2.3709 -3.4747 1.6932 20 6 2.6416 -3.7409 3.1755 21 6 2.4650 -2.3053 2.6765 22 6 4.0236 -2.6285 -0.0375 23 1 -0.4851 0.8400 0.0004 24 1 3.8410 0.5962 -1.1545 25 1 3.5153 -0.8574 -2.1286 26 1 6.8484 -2.1865 -1.6726 27 1 5.4601 -2.2179 -2.7901 28 1 2.9871 -6.0522 1.8038 29 1 4.2857 -6.8387 1.0843 30 1 1.3837 -3.7302 1.3082 31 1 3.6469 -4.0563 3.4548 32 1 1.8326 -4.1718 3.7654 33 1 1.5397 -1.7919 2.9379 34 1 3.3540 -1.6765 2.6280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = 1.113388 kcal Electronic energy + Delta-G solvation = -18672.182463 eV Core-core repulsion = 15889.758319 eV Total energy + Delta-G solvation = -2782.424145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90619 -38.93750 -36.26336 -35.49693 -34.58032 -32.36873 -30.10345 -27.06949 -25.55373 -24.75680 -23.27482 -22.88563 -20.73346 -19.34859 -19.03408 -18.66577 -17.53283 -16.83044 -16.65706 -16.33666 -16.06832 -15.50486 -15.17570 -14.76320 -14.51448 -14.40273 -14.04440 -13.45253 -13.28578 -12.88066 -12.68592 -12.24743 -12.10906 -11.98894 -11.78064 -11.51267 -11.24572 -11.12268 -10.96413 -10.72971 -10.71414 -10.32381 -8.93919 -8.21481 -8.14101 -6.19878 0.37138 0.54372 1.06136 1.28142 1.36248 1.43135 1.97907 2.33380 2.93981 3.08613 3.12412 3.17523 4.03197 4.11855 4.17682 4.31955 4.33315 4.43875 4.48950 4.51791 4.59848 4.82956 4.90678 4.92926 5.20057 5.22632 5.32506 5.40478 5.46535 5.52407 5.58705 5.93028 6.18747 6.39104 6.47100 6.84109 6.93145 7.39507 8.93886 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.010108 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.840488 B = 2769.540170 C = 3856.913138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.026 3.974 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.471 4.471 8 H 0.057 0.943 9 C 0.044 3.956 10 H 0.033 0.967 11 C 0.059 3.941 12 O -0.396 6.396 13 C 0.146 3.854 14 C -0.318 4.318 15 S 0.134 5.866 16 C 0.124 3.876 17 N -0.829 5.829 18 C -0.192 4.192 19 C -0.061 4.061 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.018 4.018 23 H 0.263 0.737 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.122 0.878 27 H 0.070 0.930 28 H 0.410 0.590 29 H 0.412 0.588 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -11.010 1.566 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.171 4.171 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.051 0.949 11 C -0.018 4.018 12 O -0.315 6.315 13 C 0.068 3.932 14 C -0.436 4.436 15 S 0.391 5.609 16 C -0.097 4.097 17 N -0.375 5.375 18 C -0.207 4.207 19 C -0.082 4.082 20 C -0.199 4.199 21 C -0.187 4.187 22 C -0.030 4.030 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.139 0.861 27 H 0.087 0.913 28 H 0.242 0.758 29 H 0.242 0.758 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.760 -11.754 0.946 16.654 hybrid contribution -1.674 1.755 0.612 2.501 sum 10.087 -9.999 1.558 14.288 Atomic orbital electron populations 1.69970 1.07486 1.27409 1.53280 1.25515 0.95137 1.01262 0.95185 0.86408 0.79452 0.81214 0.78899 1.19362 1.22121 1.17923 1.20895 0.88702 0.93471 1.47886 0.92454 1.18722 0.95355 0.89394 0.94194 0.94919 1.23143 0.80374 0.99248 0.99013 1.87902 1.24082 1.29219 1.90311 1.21200 0.99229 0.78416 0.94394 1.24974 1.07832 0.98793 1.11961 1.83082 1.34277 1.03950 1.39589 1.21621 0.99613 0.90512 0.97987 1.41563 1.35851 1.07792 1.52330 1.17520 1.04444 0.91721 1.07059 1.19914 0.95216 1.04306 0.88741 1.23144 1.02752 0.98657 0.95321 1.22454 1.01385 0.91087 1.03823 1.19255 0.92993 0.96306 0.94443 0.92762 0.91309 0.93213 0.86077 0.91252 0.75776 0.75762 0.90490 0.88646 0.87423 0.90907 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.96 21.45 0.30 -56.44 16 2 C 0.03 1.48 5.45 84.66 0.46 1.94 16 3 Si 0.91 44.20 24.29 68.60 1.67 45.87 16 4 H -0.27 -12.46 6.98 99.48 0.69 -11.76 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.25 -11.96 6.52 99.48 0.65 -11.31 16 7 C -0.47 -25.60 6.75 25.60 0.17 -25.43 16 8 H 0.06 3.42 6.00 -2.91 -0.02 3.40 16 9 C 0.04 2.13 1.37 -11.68 -0.02 2.11 16 10 H 0.03 1.67 6.21 -2.39 -0.01 1.66 16 11 C 0.06 2.66 5.35 72.06 0.39 3.04 16 12 O -0.40 -16.14 10.78 -148.98 -1.61 -17.74 16 13 C 0.15 4.82 7.23 71.45 0.52 5.34 16 14 C -0.32 -11.60 6.45 25.10 0.16 -11.44 16 15 S 0.13 3.74 23.31 -56.49 -1.32 2.43 16 16 C 0.12 3.82 7.52 82.44 0.62 4.44 16 17 N -0.83 -18.05 9.04 -53.87 -0.49 -18.54 16 18 C -0.19 -7.39 5.13 -20.69 -0.11 -7.49 16 19 C -0.06 -2.37 3.35 -11.51 -0.04 -2.41 16 20 C -0.16 -4.94 9.49 30.60 0.29 -4.65 16 21 C -0.15 -6.02 8.02 30.62 0.25 -5.77 16 22 C -0.02 -0.78 5.34 -19.94 -0.11 -0.88 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.07 3.19 3.71 -2.39 -0.01 3.18 16 25 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 26 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.41 8.40 7.66 -92.71 -0.71 7.69 16 29 H 0.41 6.36 8.96 -92.71 -0.83 5.53 16 30 H 0.08 3.30 7.66 -2.39 -0.02 3.28 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 32 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.07 3.08 6.85 -2.39 -0.02 3.07 16 Total: -1.00 -64.71 277.54 0.69 -64.02 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.45 Total: 21.61 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 2.59 Total: -41.20 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -0.19 Total: -74.98 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.61 Total: -17.74 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.32 Total: 2.43 kcal Total: -64.71 0.69 -64.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.130 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds