Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47225 * 59.99874 * 3 2 1 6 6 H 1.48496 * 109.47186 * 299.99628 * 3 2 1 7 7 C 1.37887 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99547 * 171.71484 * 7 2 1 9 9 C 1.50695 * 120.00130 * 351.72223 * 7 2 1 10 10 H 1.09007 * 109.74204 * 332.13285 * 9 7 2 11 11 C 1.53213 * 109.75277 * 92.86801 * 9 7 2 12 12 O 1.42978 * 109.51391 * 168.68985 * 11 9 7 13 13 C 1.43230 * 113.80685 * 288.84049 * 12 11 9 14 14 C 1.51371 * 108.24137 * 50.39601 * 13 12 11 15 15 S 1.75564 * 126.08612 * 165.15320 * 14 13 12 16 16 C 1.75785 * 91.12165 * 180.02562 * 15 14 13 17 17 N 1.39619 * 125.22758 * 180.02562 * 16 15 14 18 18 C 1.33772 * 109.54999 * 359.97438 * 16 15 14 19 19 C 1.50698 * 122.29677 * 179.97438 * 18 16 15 20 20 C 1.52994 * 117.50267 * 312.31878 * 19 18 16 21 21 C 1.53004 * 117.50193 * 243.65803 * 19 18 16 22 22 C 1.34736 * 123.81512 * 345.15126 * 14 13 12 23 23 H 0.96994 * 120.00027 * 184.27423 * 1 2 3 24 24 H 1.09009 * 109.46842 * 288.71849 * 11 9 7 25 25 H 1.08999 * 109.47139 * 48.70254 * 11 9 7 26 26 H 1.08999 * 109.71009 * 290.70594 * 13 12 11 27 27 H 1.09008 * 109.70704 * 170.08461 * 13 12 11 28 28 H 0.96996 * 120.00031 * 353.42354 * 17 16 15 29 29 H 0.96998 * 119.99708 * 173.41064 * 17 16 15 30 30 H 1.08997 * 115.54900 * 97.99324 * 19 18 16 31 31 H 1.09005 * 117.49817 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.50216 * 145.01607 * 20 19 18 33 33 H 1.08996 * 117.50148 * 214.98550 * 21 19 18 34 34 H 1.09000 * 117.49645 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8906 2.3963 -1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0760 -1.1991 -0.1342 9 6 1.2628 -2.4923 0.1890 10 1 0.3599 -2.3188 0.7747 11 6 0.8905 -3.0789 -1.1765 12 8 0.4277 -4.4214 -1.0095 13 6 1.4610 -5.3501 -0.6614 14 6 2.2343 -4.7817 0.5092 15 16 3.3465 -5.6655 1.5408 16 6 3.6672 -4.2216 2.4907 17 7 4.5330 -4.1525 3.5837 18 6 2.9550 -3.1988 2.0047 19 6 3.0132 -1.8188 2.6074 20 6 2.8805 -1.7054 4.1273 21 6 1.7280 -1.2618 3.2229 22 6 2.1565 -3.4965 0.9061 23 1 -0.4850 -0.8377 0.0626 24 1 0.1023 -2.4763 -1.6282 25 1 1.7668 -3.0753 -1.8247 26 1 2.1300 -5.4909 -1.5104 27 1 1.0173 -6.3052 -0.3800 28 1 4.9404 -4.9611 3.9317 29 1 4.7274 -3.2958 3.9950 30 1 3.6774 -1.1147 2.1063 31 1 2.7506 -2.6290 4.6915 32 1 3.4572 -0.9265 4.6262 33 1 1.5469 -0.1912 3.1271 34 1 0.8402 -1.8933 3.1916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260997880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = 6.913108 kcal Electronic energy + Delta-G solvation = -18676.588531 eV Core-core repulsion = 15894.415881 eV Total energy + Delta-G solvation = -2782.172650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26512 -37.42489 -34.76574 -34.00462 -33.04116 -29.64454 -28.58728 -25.03058 -23.74655 -23.12958 -21.79396 -21.50043 -19.22787 -17.98433 -17.70225 -16.51796 -15.82182 -15.26240 -14.96442 -14.85462 -14.21104 -13.84577 -13.61793 -13.32294 -13.03902 -12.56769 -11.90738 -11.66085 -11.52308 -11.06831 -10.99574 -10.72882 -10.64066 -10.40457 -10.16016 -9.74535 -9.62823 -9.43812 -9.31847 -9.05265 -8.74712 -8.21486 -7.52748 -6.81901 -6.38209 -4.06156 1.81948 1.90428 2.53509 3.40041 3.41401 3.54144 3.55940 4.22740 4.46689 4.53983 4.70658 5.34026 5.43174 5.60793 5.72542 5.77021 5.85089 5.89244 6.06749 6.08624 6.32867 6.39251 6.55140 6.67604 6.72040 6.80183 6.97389 7.02674 7.15235 7.27106 7.37684 7.62456 7.87406 7.93809 8.23526 8.44128 8.84433 9.61170 10.99997 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.010242 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.755193 B = 2733.256472 C = 3892.897972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.030 3.970 3 Si 1.062 2.938 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.061 3.939 10 H 0.057 0.943 11 C 0.063 3.937 12 O -0.392 6.392 13 C 0.156 3.844 14 C -0.300 4.300 15 S 0.044 5.956 16 C 0.111 3.889 17 N -0.852 5.852 18 C -0.148 4.148 19 C -0.042 4.042 20 C -0.214 4.214 21 C -0.137 4.137 22 C 0.011 3.989 23 H 0.272 0.728 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.393 0.607 29 H 0.404 0.596 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -7.423 5.481 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.891 3.109 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.609 4.609 8 H 0.069 0.931 9 C 0.040 3.960 10 H 0.075 0.925 11 C -0.013 4.013 12 O -0.311 6.311 13 C 0.077 3.923 14 C -0.417 4.417 15 S 0.301 5.699 16 C -0.108 4.108 17 N -0.398 5.398 18 C -0.164 4.164 19 C -0.062 4.062 20 C -0.251 4.251 21 C -0.174 4.174 22 C 0.000 4.000 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.221 0.779 29 H 0.236 0.764 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.062 -7.325 5.409 11.523 hybrid contribution 0.384 -0.168 0.357 0.550 sum 7.446 -7.493 5.765 12.034 Atomic orbital electron populations 1.70747 1.06791 1.31189 1.45669 1.25633 0.96362 1.01992 0.93536 0.83640 0.74755 0.75414 0.77110 1.21482 1.21258 1.21445 1.21603 0.95014 0.90211 1.54045 0.93073 1.18624 0.94294 0.91955 0.91110 0.92508 1.23225 0.98790 0.79820 0.99508 1.87931 1.33622 1.19715 1.89837 1.20759 0.88524 0.91839 0.91189 1.24755 1.11243 0.97899 1.07810 1.83414 1.47125 1.11593 1.27787 1.21439 0.98047 0.96985 0.94311 1.41629 1.52580 1.11566 1.34026 1.17574 1.03371 0.94370 1.01097 1.20056 1.01624 0.93738 0.90779 1.23171 1.05464 1.02409 0.94063 1.22595 0.92319 1.01043 1.01459 1.19773 0.94877 0.92569 0.92809 0.91651 0.89556 0.94069 0.93232 0.89681 0.77934 0.76413 0.87630 0.89743 0.89681 0.89029 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.40 13.62 55.43 0.76 -24.64 16 2 C 0.03 0.79 5.44 -17.81 -0.10 0.69 16 3 Si 1.06 23.98 29.91 -169.99 -5.08 18.90 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -14.58 5.63 -34.44 -0.19 -14.77 16 8 H 0.05 1.36 7.65 -52.49 -0.40 0.96 16 9 C 0.06 1.49 1.94 -91.99 -0.18 1.31 16 10 H 0.06 1.52 6.71 -51.93 -0.35 1.17 16 11 C 0.06 1.45 6.07 37.27 0.23 1.67 16 12 O -0.39 -8.50 10.78 -35.23 -0.38 -8.88 16 13 C 0.16 2.91 7.23 36.34 0.26 3.17 16 14 C -0.30 -6.02 6.45 -35.22 -0.23 -6.24 16 15 S 0.04 0.73 23.31 -107.50 -2.51 -1.78 16 16 C 0.11 1.92 7.43 -15.57 -0.12 1.80 16 17 N -0.85 -11.27 8.59 31.62 0.27 -11.00 16 18 C -0.15 -2.99 5.23 -105.89 -0.55 -3.55 16 19 C -0.04 -0.81 3.74 -91.77 -0.34 -1.15 16 20 C -0.21 -3.44 8.51 -26.70 -0.23 -3.67 16 21 C -0.14 -2.70 9.49 -26.69 -0.25 -2.95 16 22 C 0.01 0.25 5.40 -104.74 -0.57 -0.32 16 23 H 0.27 7.66 6.70 -40.82 -0.27 7.38 16 24 H 0.09 2.06 8.14 -51.92 -0.42 1.63 16 25 H 0.04 0.94 8.03 -51.93 -0.42 0.53 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.38 8.14 -51.92 -0.42 0.95 16 28 H 0.39 4.14 8.96 -40.82 -0.37 3.78 16 29 H 0.40 5.00 6.82 -40.82 -0.28 4.72 16 30 H 0.11 2.19 7.72 -51.93 -0.40 1.79 16 31 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 289.13 15.07 4.36 4.36 Total: -1.00 -28.08 289.13 -9.07 -37.15 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.21 Total: 9.92 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.27 Total: -24.02 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 1.03 Total: -35.64 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.38 Total: -8.88 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.90 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.08 -9.07 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.058 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds