Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48508 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46985 * 299.99409 * 3 2 1 6 6 H 1.48500 * 109.47445 * 59.99585 * 3 2 1 7 7 C 1.37875 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00164 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.28102 * 301.97091 * 9 7 2 11 11 N 1.46760 * 110.24787 * 63.94458 * 9 7 2 12 12 C 1.34419 * 111.30050 * 136.01981 * 11 9 7 13 13 O 1.21285 * 124.94147 * 179.56155 * 12 11 9 14 14 C 1.51276 * 110.11772 * 359.58924 * 12 11 9 15 15 C 1.54478 * 110.24718 * 179.97438 * 9 7 2 16 16 H 1.08999 * 111.00077 * 333.71897 * 15 9 7 17 17 C 1.50701 * 110.96983 * 97.46252 * 15 9 7 18 18 C 1.38246 * 119.98821 * 233.83597 * 17 15 9 19 19 C 1.38215 * 120.01338 * 180.27925 * 18 17 15 20 20 C 1.38358 * 119.98339 * 359.46462 * 19 18 17 21 21 Cl 1.73596 * 120.00861 * 180.24067 * 20 19 18 22 22 C 1.38349 * 119.97593 * 0.51073 * 20 19 18 23 23 C 1.38212 * 119.98495 * 359.74279 * 22 20 19 24 24 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 25 25 H 0.96998 * 124.34861 * 316.03983 * 11 9 7 26 26 H 1.08998 * 110.48896 * 225.06867 * 14 12 11 27 27 H 1.09001 * 110.59779 * 102.48087 * 14 12 11 28 28 H 1.08002 * 119.98964 * 359.97438 * 18 17 15 29 29 H 1.07998 * 120.00901 * 179.70367 * 19 18 17 30 30 H 1.08000 * 120.00704 * 179.72657 * 22 20 19 31 31 H 1.08004 * 119.99489 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5929 -2.5555 0.8676 11 7 0.4738 -2.6369 -1.2367 12 6 0.5877 -3.8741 -1.7497 13 8 0.0426 -4.2591 -2.7625 14 6 1.4943 -4.7166 -0.8799 15 6 2.2389 -3.6868 0.0005 16 1 3.1901 -3.4036 -0.4500 17 6 2.4433 -4.2183 1.3958 18 6 3.7210 -4.3353 1.9104 19 6 3.9094 -4.8281 3.1879 20 6 2.8182 -5.1940 3.9558 21 17 3.0537 -5.8072 5.5627 22 6 1.5397 -5.0762 3.4405 23 6 1.3529 -4.5882 2.1609 24 1 -0.4849 0.8400 -0.0004 25 1 -0.0541 -1.9264 -1.6334 26 1 2.2008 -5.2753 -1.4937 27 1 0.9085 -5.3958 -0.2603 28 1 4.5725 -4.0461 1.3122 29 1 4.9080 -4.9240 3.5880 30 1 0.6878 -5.3658 4.0378 31 1 0.3549 -4.4965 1.7584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248494.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = -34.168792 kcal Electronic energy + Delta-G solvation = -17413.037518 eV Core-core repulsion = 14491.206623 eV Total energy + Delta-G solvation = -2921.830896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91525 -38.53336 -36.47090 -35.56856 -32.79707 -31.71691 -30.88684 -28.72871 -27.62952 -24.19308 -22.84547 -22.02895 -19.79167 -19.46204 -17.18955 -17.05302 -15.85701 -15.54879 -14.83662 -14.66311 -14.60766 -13.78285 -13.42402 -13.31005 -13.11137 -12.68769 -12.49072 -12.32160 -12.08283 -11.47727 -11.31045 -11.13512 -11.06560 -10.74208 -10.71091 -10.42490 -10.14290 -9.70283 -9.10492 -8.84001 -8.77017 -8.23018 -7.74489 -6.36819 -4.47655 1.35300 1.49754 2.24054 3.13304 3.23391 3.25860 3.51645 3.83504 4.18556 4.56464 4.91195 4.95265 5.04229 5.15635 5.39831 5.45072 5.56720 5.61096 5.72994 5.95672 5.99091 6.12962 6.29158 6.39113 6.39453 6.50627 6.86310 7.01776 7.22122 7.59171 7.74960 8.04152 8.30797 8.66387 9.23626 9.37305 10.70393 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.006387 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.901366 B = 4382.826029 C = 5494.923092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.260 3.740 10 H 0.051 0.949 11 N -0.689 5.689 12 C 0.499 3.501 13 O -0.582 6.582 14 C -0.148 4.148 15 C -0.065 4.065 16 H 0.093 0.907 17 C -0.037 4.037 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.046 4.046 21 Cl -0.087 7.087 22 C -0.109 4.109 23 C -0.100 4.100 24 H 0.268 0.732 25 H 0.412 0.588 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -8.232 7.496 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.086 0.914 9 C 0.158 3.842 10 H 0.068 0.932 11 N -0.340 5.340 12 C 0.284 3.716 13 O -0.465 6.465 14 C -0.188 4.188 15 C -0.084 4.084 16 H 0.111 0.889 17 C -0.038 4.038 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.072 4.072 21 Cl -0.058 7.058 22 C -0.127 4.127 23 C -0.118 4.118 24 H 0.078 0.922 25 H 0.251 0.749 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.456 -8.423 7.216 12.361 hybrid contribution 0.228 1.323 0.145 1.350 sum 5.684 -7.100 7.361 11.700 Atomic orbital electron populations 1.69880 1.06057 1.27677 1.48634 1.25097 0.94973 0.99802 0.93402 0.86414 0.80207 0.82895 0.77849 1.19446 1.20740 1.20699 1.21339 0.93459 0.89745 1.52435 0.91358 1.19474 0.88333 0.92061 0.84286 0.93188 1.47115 1.48141 1.11656 1.27121 1.20849 0.81849 0.84203 0.84732 1.90633 1.52678 1.76669 1.26527 1.22421 0.99251 0.98266 0.98843 1.21340 1.01010 0.95548 0.90461 0.88850 1.19834 0.92837 0.95284 0.95816 1.21020 0.97175 0.98970 0.94794 1.20954 0.97785 0.99959 0.94287 1.20836 0.95218 1.04356 0.86779 1.98340 1.97368 1.86446 1.23660 1.20970 0.95307 1.00420 0.96034 1.21034 0.99532 0.98007 0.93242 0.92208 0.74873 0.89304 0.88890 0.85116 0.85400 0.85328 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.88 12.38 55.43 0.69 -22.19 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 3 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -12.79 8.73 -34.44 -0.30 -13.09 16 8 H 0.07 1.61 7.60 -52.48 -0.40 1.22 16 9 C 0.26 5.63 2.77 -68.17 -0.19 5.44 16 10 H 0.05 1.16 6.72 -51.93 -0.35 0.81 16 11 N -0.69 -15.49 5.69 -53.89 -0.31 -15.80 16 12 C 0.50 10.72 8.43 -10.86 -0.09 10.63 16 13 O -0.58 -14.29 18.03 5.55 0.10 -14.19 16 14 C -0.15 -2.51 6.34 -26.76 -0.17 -2.68 16 15 C -0.06 -1.13 2.86 -90.15 -0.26 -1.39 16 16 H 0.09 1.61 7.59 -51.93 -0.39 1.21 16 17 C -0.04 -0.58 4.96 -104.62 -0.52 -1.10 16 18 C -0.10 -1.40 9.68 -39.59 -0.38 -1.79 16 19 C -0.11 -1.44 9.83 -39.55 -0.39 -1.82 16 20 C -0.05 -0.61 6.32 -39.50 -0.25 -0.86 16 21 Cl -0.09 -1.05 28.96 -51.86 -1.50 -2.55 16 22 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 23 C -0.10 -1.50 8.03 -39.59 -0.32 -1.81 16 24 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.41 9.92 8.13 -40.82 -0.33 9.59 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 28 H 0.13 1.58 7.98 -52.49 -0.42 1.17 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.96 7.35 -52.48 -0.39 1.57 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -27.37 284.11 -8.16 -35.53 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.05 Total: 9.00 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.35 Total: -8.62 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.38 Total: -37.99 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.10 Total: -14.19 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.37 -8.16 -35.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248494.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.360 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds