Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48508 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46985 * 299.99409 * 3 2 1 6 6 H 1.48500 * 109.47445 * 59.99585 * 3 2 1 7 7 C 1.37875 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00164 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.28102 * 301.97091 * 9 7 2 11 11 N 1.46760 * 110.24787 * 63.94458 * 9 7 2 12 12 C 1.34419 * 111.30050 * 136.01981 * 11 9 7 13 13 O 1.21285 * 124.94147 * 179.56155 * 12 11 9 14 14 C 1.51276 * 110.11772 * 359.58924 * 12 11 9 15 15 C 1.54478 * 110.24718 * 179.97438 * 9 7 2 16 16 H 1.08999 * 111.00077 * 333.71897 * 15 9 7 17 17 C 1.50701 * 110.96983 * 97.46252 * 15 9 7 18 18 C 1.38246 * 119.98821 * 233.83597 * 17 15 9 19 19 C 1.38215 * 120.01338 * 180.27925 * 18 17 15 20 20 C 1.38358 * 119.98339 * 359.46462 * 19 18 17 21 21 Cl 1.73596 * 120.00861 * 180.24067 * 20 19 18 22 22 C 1.38349 * 119.97593 * 0.51073 * 20 19 18 23 23 C 1.38212 * 119.98495 * 359.74279 * 22 20 19 24 24 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 25 25 H 0.96998 * 124.34861 * 316.03983 * 11 9 7 26 26 H 1.08998 * 110.48896 * 225.06867 * 14 12 11 27 27 H 1.09001 * 110.59779 * 102.48087 * 14 12 11 28 28 H 1.08002 * 119.98964 * 359.97438 * 18 17 15 29 29 H 1.07998 * 120.00901 * 179.70367 * 19 18 17 30 30 H 1.08000 * 120.00704 * 179.72657 * 22 20 19 31 31 H 1.08004 * 119.99489 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5929 -2.5555 0.8676 11 7 0.4738 -2.6369 -1.2367 12 6 0.5877 -3.8741 -1.7497 13 8 0.0426 -4.2591 -2.7625 14 6 1.4943 -4.7166 -0.8799 15 6 2.2389 -3.6868 0.0005 16 1 3.1901 -3.4036 -0.4500 17 6 2.4433 -4.2183 1.3958 18 6 3.7210 -4.3353 1.9104 19 6 3.9094 -4.8281 3.1879 20 6 2.8182 -5.1940 3.9558 21 17 3.0537 -5.8072 5.5627 22 6 1.5397 -5.0762 3.4405 23 6 1.3529 -4.5882 2.1609 24 1 -0.4849 0.8400 -0.0004 25 1 -0.0541 -1.9264 -1.6334 26 1 2.2008 -5.2753 -1.4937 27 1 0.9085 -5.3958 -0.2603 28 1 4.5725 -4.0461 1.3122 29 1 4.9080 -4.9240 3.5880 30 1 0.6878 -5.3658 4.0378 31 1 0.3549 -4.4965 1.7584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248494.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = -49.720567 kcal Electronic energy + Delta-G solvation = -17413.711894 eV Core-core repulsion = 14491.206623 eV Total energy + Delta-G solvation = -2922.505271 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36369 -39.86653 -37.68789 -37.06178 -34.57037 -33.19674 -31.94022 -30.08142 -29.34945 -25.78481 -24.03680 -23.32234 -21.15440 -21.11446 -18.96037 -18.27501 -17.41590 -17.01163 -16.46604 -16.06721 -15.86153 -15.39543 -14.65810 -14.57935 -14.30676 -14.28675 -14.00825 -13.81496 -13.62524 -12.87201 -12.60641 -12.57392 -12.32798 -12.25929 -12.03695 -11.83808 -11.60289 -11.32178 -10.89852 -10.60730 -9.89103 -9.55342 -9.37707 -8.25186 -6.40828 0.25309 0.44490 1.22805 1.40188 1.45625 1.54454 1.81798 2.38035 2.69249 2.82904 3.26959 3.66678 3.84354 3.99765 4.05072 4.09494 4.38516 4.44579 4.51384 4.67383 4.83846 4.90354 4.98506 5.12911 5.33943 5.35231 5.48915 5.68974 5.75670 5.93185 5.95286 6.26353 6.49377 6.85001 7.33363 7.57292 8.81346 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.006387 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.901366 B = 4382.826029 C = 5494.923092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.257 3.743 10 H 0.030 0.970 11 N -0.697 5.697 12 C 0.492 3.508 13 O -0.617 6.617 14 C -0.133 4.133 15 C -0.049 4.049 16 H 0.099 0.901 17 C -0.055 4.055 18 C -0.101 4.101 19 C -0.109 4.109 20 C -0.050 4.050 21 Cl -0.074 7.074 22 C -0.112 4.112 23 C -0.111 4.111 24 H 0.267 0.733 25 H 0.398 0.602 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -9.024 8.580 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.155 3.845 10 H 0.048 0.952 11 N -0.346 5.346 12 C 0.279 3.721 13 O -0.502 6.502 14 C -0.173 4.173 15 C -0.068 4.068 16 H 0.117 0.883 17 C -0.055 4.055 18 C -0.119 4.119 19 C -0.127 4.127 20 C -0.076 4.076 21 Cl -0.045 7.045 22 C -0.131 4.131 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.235 0.765 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.353 -9.230 8.322 14.440 hybrid contribution -0.371 1.547 -0.128 1.596 sum 6.982 -7.683 8.194 13.226 Atomic orbital electron populations 1.69980 1.07230 1.28090 1.50004 1.25781 0.95584 1.02646 0.93466 0.85549 0.79507 0.79566 0.77320 1.18537 1.21172 1.20846 1.21688 0.93822 0.90808 1.51422 0.90999 1.19448 0.88666 0.93261 0.83104 0.95214 1.47216 1.48130 1.11883 1.27383 1.21569 0.81769 0.84238 0.84537 1.90604 1.54197 1.77221 1.28199 1.22403 0.98813 0.97753 0.98329 1.21157 0.99876 0.93711 0.92080 0.88307 1.19733 0.93941 0.96863 0.95007 1.21226 0.96934 0.98422 0.95332 1.21229 0.98825 0.98868 0.93777 1.21011 0.95297 1.03875 0.87427 1.98348 1.97304 1.86212 1.22680 1.21124 0.96212 1.00073 0.95651 1.21048 0.99209 0.98675 0.93986 0.92425 0.76456 0.86770 0.87027 0.83301 0.82998 0.83909 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.12 12.38 21.45 0.27 -47.86 16 2 C 0.03 1.34 5.40 84.65 0.46 1.80 16 3 Si 0.95 39.99 29.54 68.60 2.03 42.02 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -25.79 8.73 25.60 0.22 -25.57 16 8 H 0.07 3.32 7.60 -2.91 -0.02 3.29 16 9 C 0.26 11.13 2.77 44.70 0.12 11.25 16 10 H 0.03 1.42 6.72 -2.39 -0.02 1.40 16 11 N -0.70 -31.86 5.69 -442.99 -2.52 -34.38 16 12 C 0.49 21.10 8.43 87.90 0.74 21.84 16 13 O -0.62 -30.46 18.03 -3.05 -0.05 -30.52 16 14 C -0.13 -4.31 6.34 30.58 0.19 -4.11 16 15 C -0.05 -1.65 2.86 -10.49 -0.03 -1.68 16 16 H 0.10 3.19 7.59 -2.39 -0.02 3.17 16 17 C -0.05 -1.61 4.96 -19.86 -0.10 -1.71 16 18 C -0.10 -2.51 9.68 22.27 0.22 -2.30 16 19 C -0.11 -2.46 9.83 22.29 0.22 -2.24 16 20 C -0.05 -1.20 6.32 22.32 0.14 -1.06 16 21 Cl -0.07 -1.60 28.96 -2.72 -0.08 -1.68 16 22 C -0.11 -2.84 9.83 22.29 0.22 -2.63 16 23 C -0.11 -3.19 8.03 22.26 0.18 -3.01 16 24 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.40 19.85 8.13 -92.71 -0.75 19.10 16 26 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.11 3.22 7.07 -2.39 -0.02 3.21 16 28 H 0.15 3.10 7.98 -2.91 -0.02 3.07 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.12 3.68 7.35 -2.91 -0.02 3.66 16 Total: -1.00 -58.18 284.11 2.63 -55.55 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.41 Total: 26.27 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 2.58 Total: -9.41 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.26 Total: -82.23 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -58.18 2.63 -55.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248494.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -58.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds