Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00145 * 2 1 4 4 H 1.48499 * 109.47155 * 270.00007 * 3 2 1 5 5 H 1.48499 * 109.47133 * 30.00514 * 3 2 1 6 6 H 1.48497 * 109.46815 * 150.00244 * 3 2 1 7 7 C 1.37876 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99903 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.28259 * 62.98993 * 9 7 2 11 11 N 1.46756 * 110.24849 * 301.00498 * 9 7 2 12 12 C 1.34414 * 111.30635 * 258.01919 * 11 9 7 13 13 O 1.21285 * 124.94519 * 179.63291 * 12 11 9 14 14 C 1.51284 * 110.11564 * 359.59154 * 12 11 9 15 15 C 1.54482 * 110.24105 * 184.95941 * 9 7 2 16 16 H 1.09009 * 111.00071 * 211.71757 * 15 9 7 17 17 C 1.50696 * 110.97450 * 335.46829 * 15 9 7 18 18 C 1.38238 * 119.98596 * 83.11786 * 17 15 9 19 19 C 1.38215 * 120.01393 * 179.72894 * 18 17 15 20 20 C 1.38353 * 119.98594 * 0.54543 * 19 18 17 21 21 Cl 1.73601 * 120.01586 * 179.74998 * 20 19 18 22 22 C 1.38360 * 119.97128 * 359.72703 * 20 19 18 23 23 C 1.38209 * 119.98742 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99464 * 359.97438 * 1 2 3 25 25 H 0.97011 * 124.34691 * 78.04153 * 11 9 7 26 26 H 1.09001 * 110.48712 * 225.07601 * 14 12 11 27 27 H 1.08999 * 110.59732 * 102.48059 * 14 12 11 28 28 H 1.08002 * 119.99616 * 359.97438 * 18 17 15 29 29 H 1.07997 * 120.00973 * 180.26485 * 19 18 17 30 30 H 1.07997 * 120.00334 * 180.02562 * 22 20 19 31 31 H 1.07998 * 119.99515 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4991 -0.0005 10 1 0.6594 -2.5939 -0.9112 11 7 0.3831 -2.5846 1.1799 12 6 0.9220 -3.3726 2.1262 13 8 0.4170 -3.6096 3.2032 14 6 2.2495 -3.9217 1.6520 15 6 2.2341 -3.6841 0.1241 16 1 1.8580 -4.5609 -0.4032 17 6 3.6036 -3.3036 -0.3763 18 6 4.4821 -2.6349 0.4557 19 6 5.7404 -2.2906 -0.0009 20 6 6.1166 -2.6053 -1.2946 21 17 7.6945 -2.1674 -1.8709 22 6 5.2349 -3.2695 -2.1286 23 6 3.9792 -3.6188 -1.6689 24 1 -0.4849 0.8401 0.0004 25 1 -0.4700 -2.1308 1.2661 26 1 2.3222 -4.9868 1.8717 27 1 3.0753 -3.3805 2.1139 28 1 4.1866 -2.3850 1.4640 29 1 6.4282 -1.7720 0.6505 30 1 5.5282 -3.5158 -3.1384 31 1 3.2907 -4.1369 -2.3200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = -21.426405 kcal Electronic energy + Delta-G solvation = -17797.628822 eV Core-core repulsion = 14876.350478 eV Total energy + Delta-G solvation = -2921.278344 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98341 -38.40774 -36.38035 -35.48189 -32.61115 -31.74384 -30.79415 -28.57618 -27.32210 -24.59703 -22.43287 -22.11096 -19.69915 -19.40267 -17.38957 -16.41847 -16.27950 -15.12719 -14.84068 -14.66149 -14.43524 -13.84641 -13.35467 -13.18797 -13.01162 -12.68455 -12.60311 -12.29414 -11.68238 -11.39986 -11.19684 -11.06329 -10.94760 -10.73571 -10.58489 -10.31332 -9.91993 -9.78493 -9.01617 -8.69553 -8.58164 -8.06784 -7.65449 -6.31179 -4.39454 1.53210 1.67070 2.37846 3.17554 3.26034 3.28749 3.61022 3.98952 4.23830 4.64637 5.00710 5.04720 5.18659 5.20234 5.39485 5.57145 5.65574 5.74233 5.78384 6.06137 6.09997 6.28277 6.37000 6.39218 6.57342 6.65600 6.94475 7.09721 7.17547 7.67043 7.92626 8.07462 8.28735 8.73021 9.32348 9.43345 10.76764 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.007916 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.566736 B = 3536.305002 C = 4606.602293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.262 3.738 10 H 0.050 0.950 11 N -0.687 5.687 12 C 0.506 3.494 13 O -0.585 6.585 14 C -0.147 4.147 15 C -0.067 4.067 16 H 0.082 0.918 17 C -0.018 4.018 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.047 4.047 21 Cl -0.092 7.092 22 C -0.112 4.112 23 C -0.107 4.107 24 H 0.266 0.734 25 H 0.409 0.591 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.435 -5.771 -4.237 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.100 0.900 9 C 0.159 3.841 10 H 0.068 0.932 11 N -0.337 5.337 12 C 0.291 3.709 13 O -0.468 6.468 14 C -0.187 4.187 15 C -0.086 4.086 16 H 0.100 0.900 17 C -0.018 4.018 18 C -0.105 4.105 19 C -0.134 4.134 20 C -0.073 4.073 21 Cl -0.063 7.063 22 C -0.131 4.131 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.248 0.752 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.255 -5.773 -3.804 11.552 hybrid contribution 0.207 1.502 -0.160 1.525 sum 9.463 -4.271 -3.963 11.113 Atomic orbital electron populations 1.69823 1.06171 1.27540 1.48851 1.25018 0.94786 0.99563 0.93428 0.86559 0.80046 0.82973 0.78395 1.20369 1.21157 1.19519 1.21814 0.94221 0.89762 1.52167 0.90028 1.19280 0.87095 0.92051 0.85630 0.93217 1.46872 1.23124 1.45622 1.18108 1.20724 0.86747 0.79462 0.83932 1.90625 1.68117 1.64632 1.23445 1.22429 0.98089 1.02052 0.96107 1.21240 0.93206 0.99570 0.94561 0.90009 1.19507 0.94152 0.94750 0.93397 1.21039 0.91893 0.96734 1.00858 1.20941 0.97197 1.01129 0.94149 1.20787 0.87084 1.04153 0.95287 1.98329 1.26626 1.92145 1.89198 1.20864 0.93594 0.99395 0.99256 1.20876 0.95305 1.00879 0.95419 0.92410 0.75213 0.89729 0.88108 0.84710 0.85633 0.85668 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 12.27 55.43 0.68 -22.28 16 2 C 0.08 1.92 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -12.72 8.13 -34.44 -0.28 -13.00 16 8 H 0.08 1.86 4.20 -52.48 -0.22 1.64 16 9 C 0.26 5.55 3.32 -68.16 -0.23 5.33 16 10 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 11 N -0.69 -15.24 5.42 -53.88 -0.29 -15.54 16 12 C 0.51 11.02 8.43 -10.86 -0.09 10.92 16 13 O -0.58 -14.55 18.03 5.55 0.10 -14.45 16 14 C -0.15 -2.55 6.27 -26.74 -0.17 -2.72 16 15 C -0.07 -1.14 3.29 -90.14 -0.30 -1.43 16 16 H 0.08 1.22 8.11 -51.92 -0.42 0.80 16 17 C -0.02 -0.28 3.95 -104.62 -0.41 -0.70 16 18 C -0.09 -1.41 6.54 -39.59 -0.26 -1.67 16 19 C -0.12 -1.74 9.83 -39.55 -0.39 -2.13 16 20 C -0.05 -0.69 6.32 -39.49 -0.25 -0.94 16 21 Cl -0.09 -1.22 28.96 -51.86 -1.50 -2.72 16 22 C -0.11 -1.57 9.83 -39.55 -0.39 -1.96 16 23 C -0.11 -1.55 9.71 -39.59 -0.38 -1.94 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.41 9.58 8.25 -40.82 -0.34 9.24 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.10 1.69 5.33 -51.93 -0.28 1.41 16 28 H 0.14 2.19 5.95 -52.49 -0.31 1.88 16 29 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -27.48 277.16 -7.92 -35.40 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.82 Total: 8.78 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.24 Total: -8.43 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.39 Total: -37.82 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.10 Total: -14.45 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.48 -7.92 -35.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.969 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds