Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00145 * 2 1 4 4 H 1.48499 * 109.47155 * 270.00007 * 3 2 1 5 5 H 1.48499 * 109.47133 * 30.00514 * 3 2 1 6 6 H 1.48497 * 109.46815 * 150.00244 * 3 2 1 7 7 C 1.37876 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99903 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.28259 * 62.98993 * 9 7 2 11 11 N 1.46756 * 110.24849 * 301.00498 * 9 7 2 12 12 C 1.34414 * 111.30635 * 258.01919 * 11 9 7 13 13 O 1.21285 * 124.94519 * 179.63291 * 12 11 9 14 14 C 1.51284 * 110.11564 * 359.59154 * 12 11 9 15 15 C 1.54482 * 110.24105 * 184.95941 * 9 7 2 16 16 H 1.09009 * 111.00071 * 211.71757 * 15 9 7 17 17 C 1.50696 * 110.97450 * 335.46829 * 15 9 7 18 18 C 1.38238 * 119.98596 * 83.11786 * 17 15 9 19 19 C 1.38215 * 120.01393 * 179.72894 * 18 17 15 20 20 C 1.38353 * 119.98594 * 0.54543 * 19 18 17 21 21 Cl 1.73601 * 120.01586 * 179.74998 * 20 19 18 22 22 C 1.38360 * 119.97128 * 359.72703 * 20 19 18 23 23 C 1.38209 * 119.98742 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99464 * 359.97438 * 1 2 3 25 25 H 0.97011 * 124.34691 * 78.04153 * 11 9 7 26 26 H 1.09001 * 110.48712 * 225.07601 * 14 12 11 27 27 H 1.08999 * 110.59732 * 102.48059 * 14 12 11 28 28 H 1.08002 * 119.99616 * 359.97438 * 18 17 15 29 29 H 1.07997 * 120.00973 * 180.26485 * 19 18 17 30 30 H 1.07997 * 120.00334 * 180.02562 * 22 20 19 31 31 H 1.07998 * 119.99515 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4991 -0.0005 10 1 0.6594 -2.5939 -0.9112 11 7 0.3831 -2.5846 1.1799 12 6 0.9220 -3.3726 2.1262 13 8 0.4170 -3.6096 3.2032 14 6 2.2495 -3.9217 1.6520 15 6 2.2341 -3.6841 0.1241 16 1 1.8580 -4.5609 -0.4032 17 6 3.6036 -3.3036 -0.3763 18 6 4.4821 -2.6349 0.4557 19 6 5.7404 -2.2906 -0.0009 20 6 6.1166 -2.6053 -1.2946 21 17 7.6945 -2.1674 -1.8709 22 6 5.2349 -3.2695 -2.1286 23 6 3.9792 -3.6188 -1.6689 24 1 -0.4849 0.8401 0.0004 25 1 -0.4700 -2.1308 1.2661 26 1 2.3222 -4.9868 1.8717 27 1 3.0753 -3.3805 2.1139 28 1 4.1866 -2.3850 1.4640 29 1 6.4282 -1.7720 0.6505 30 1 5.5282 -3.5158 -3.1384 31 1 3.2907 -4.1369 -2.3200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = -37.164736 kcal Electronic energy + Delta-G solvation = -17798.311287 eV Core-core repulsion = 14876.350478 eV Total energy + Delta-G solvation = -2921.960809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44098 -39.80340 -37.66772 -36.97958 -34.39419 -33.23734 -31.92769 -29.97300 -28.99193 -26.19046 -23.63496 -23.50458 -21.18234 -20.95707 -18.94190 -17.96665 -17.76255 -16.67720 -16.40520 -16.04421 -15.84176 -15.43062 -14.74160 -14.48308 -14.44012 -14.20313 -14.09501 -13.78798 -13.15151 -12.85562 -12.77918 -12.57584 -12.23466 -12.10403 -11.97866 -11.62142 -11.49275 -11.38669 -10.79624 -10.53273 -9.76972 -9.54238 -9.17528 -8.19356 -6.29747 0.36033 0.53514 1.28025 1.38049 1.43437 1.48967 1.89876 2.39655 2.74904 2.95488 3.33200 3.69879 3.81332 4.08156 4.12065 4.20616 4.43592 4.52000 4.54161 4.72211 4.93255 4.97146 5.08864 5.18911 5.32754 5.43157 5.46294 5.75959 5.82453 6.02218 6.16509 6.31084 6.52494 6.92552 7.43858 7.64854 8.87304 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.007916 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.566736 B = 3536.305002 C = 4606.602293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.090 0.910 9 C 0.255 3.745 10 H 0.035 0.965 11 N -0.692 5.692 12 C 0.497 3.503 13 O -0.622 6.622 14 C -0.136 4.136 15 C -0.052 4.052 16 H 0.108 0.892 17 C -0.034 4.034 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.053 4.053 21 Cl -0.080 7.080 22 C -0.111 4.111 23 C -0.106 4.106 24 H 0.261 0.739 25 H 0.397 0.603 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.297 -6.645 -5.239 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.108 0.892 9 C 0.153 3.847 10 H 0.053 0.947 11 N -0.340 5.340 12 C 0.284 3.716 13 O -0.508 6.508 14 C -0.176 4.176 15 C -0.071 4.071 16 H 0.126 0.874 17 C -0.034 4.034 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.080 4.080 21 Cl -0.051 7.051 22 C -0.130 4.130 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.234 0.766 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.153 -6.652 -4.826 13.854 hybrid contribution -0.318 1.762 0.110 1.794 sum 10.836 -4.891 -4.716 12.790 Atomic orbital electron populations 1.69921 1.07078 1.27533 1.50856 1.25636 0.95331 1.02008 0.94141 0.85864 0.79133 0.80473 0.78129 1.20274 1.22062 1.19049 1.22206 0.94847 0.90461 1.49986 0.89191 1.19304 0.87541 0.93252 0.84626 0.94742 1.46967 1.22840 1.45438 1.18739 1.21453 0.88011 0.78941 0.83187 1.90595 1.69446 1.65815 1.24901 1.22433 0.95244 1.03654 0.96239 1.21156 0.92810 0.98535 0.94574 0.87380 1.19502 0.93665 0.95933 0.94333 1.21073 0.92586 0.97404 1.00837 1.21101 0.97097 1.01163 0.94726 1.20975 0.87800 1.03892 0.95309 1.98336 1.25761 1.92029 1.88998 1.21163 0.93141 0.98479 1.00207 1.21145 0.95900 1.00372 0.94959 0.92939 0.76565 0.86807 0.87322 0.85312 0.84507 0.83353 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.06 12.27 21.45 0.26 -47.80 16 2 C 0.03 1.50 5.39 84.65 0.46 1.95 16 3 Si 0.94 40.97 29.54 68.60 2.03 43.00 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -24.79 8.13 25.60 0.21 -24.58 16 8 H 0.09 3.97 4.20 -2.91 -0.01 3.96 16 9 C 0.25 10.62 3.32 44.70 0.15 10.77 16 10 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 11 N -0.69 -30.82 5.42 -442.98 -2.40 -33.22 16 12 C 0.50 21.38 8.43 87.90 0.74 22.13 16 13 O -0.62 -31.01 18.03 -3.04 -0.05 -31.07 16 14 C -0.14 -4.45 6.27 30.59 0.19 -4.26 16 15 C -0.05 -1.65 3.29 -10.48 -0.03 -1.68 16 16 H 0.11 2.86 8.11 -2.38 -0.02 2.84 16 17 C -0.03 -1.01 3.95 -19.86 -0.08 -1.09 16 18 C -0.10 -3.05 6.54 22.26 0.15 -2.91 16 19 C -0.12 -3.41 9.83 22.29 0.22 -3.19 16 20 C -0.05 -1.41 6.32 22.33 0.14 -1.27 16 21 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.98 16 22 C -0.11 -2.74 9.83 22.29 0.22 -2.52 16 23 C -0.11 -2.73 9.71 22.26 0.22 -2.52 16 24 H 0.26 13.46 8.31 -92.71 -0.77 12.68 16 25 H 0.40 19.11 8.25 -92.70 -0.76 18.34 16 26 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.11 3.43 5.33 -2.39 -0.01 3.42 16 28 H 0.13 3.98 5.95 -2.91 -0.02 3.96 16 29 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -58.13 277.16 2.74 -55.39 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.41 Total: 24.85 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 2.57 Total: -9.17 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.14 Total: -81.02 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.98 kcal Total: -58.13 2.74 -55.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.223 kcal (2) G-P(sol) polarization free energy of solvation -58.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds