Wall clock time and date at job start Mon Mar 30 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48502 * 109.46937 * 239.99312 * 3 2 1 5 5 H 1.48493 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47292 * 119.99798 * 3 2 1 7 7 C 1.37880 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00277 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.21987 * 60.46793 * 9 7 2 11 11 N 1.46764 * 110.24421 * 298.54373 * 9 7 2 12 12 C 1.34424 * 111.30306 * 257.92773 * 11 9 7 13 13 O 1.21279 * 124.94294 * 179.32549 * 12 11 9 14 14 C 1.51281 * 110.11017 * 359.59326 * 12 11 9 15 15 C 1.54484 * 110.32256 * 182.45312 * 9 7 2 16 16 H 1.09000 * 110.96325 * 335.46597 * 15 9 7 17 17 C 1.50699 * 110.96770 * 211.74068 * 15 9 7 18 18 C 1.38236 * 119.98839 * 299.72047 * 17 15 9 19 19 C 1.38215 * 120.01222 * 179.72605 * 18 17 15 20 20 C 1.38348 * 119.98404 * 0.55232 * 19 18 17 21 21 Cl 1.73602 * 120.01064 * 179.74557 * 20 19 18 22 22 C 1.38355 * 119.97851 * 359.72342 * 20 19 18 23 23 C 1.38216 * 119.98360 * 0.02562 * 22 20 19 24 24 H 0.96997 * 120.00231 * 0.02562 * 1 2 3 25 25 H 0.97006 * 124.35221 * 77.95182 * 11 9 7 26 26 H 1.09000 * 110.48574 * 102.42830 * 14 12 11 27 27 H 1.09001 * 110.48867 * 225.06693 * 14 12 11 28 28 H 1.08005 * 119.99074 * 0.02562 * 18 17 15 29 29 H 1.07999 * 120.00920 * 180.27415 * 19 18 17 30 30 H 1.07999 * 120.01086 * 179.97438 * 22 20 19 31 31 H 1.07994 * 119.99248 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6265 -2.5736 -0.8896 11 7 0.4270 -2.6097 1.2098 12 6 0.9989 -3.4188 2.1183 13 8 0.5359 -3.6748 3.2096 14 6 2.3073 -3.9582 1.5839 15 6 2.2364 -3.6874 0.0632 16 1 3.2133 -3.4051 -0.3293 17 6 1.6873 -4.8825 -0.6725 18 6 0.4933 -5.4522 -0.2714 19 6 -0.0135 -6.5448 -0.9494 20 6 0.6800 -7.0754 -2.0224 21 17 0.0473 -8.4518 -2.8703 22 6 1.8779 -6.5084 -2.4199 23 6 2.3811 -5.4126 -1.7444 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4217 -2.1574 1.3371 26 1 3.1489 -3.4261 2.0273 27 1 2.3864 -5.0280 1.7775 28 1 -0.0459 -5.0403 0.5689 29 1 -0.9486 -6.9870 -0.6387 30 1 2.4199 -6.9224 -3.2572 31 1 3.3159 -4.9696 -2.0548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:54 Heat of formation + Delta-G solvation = -31.815342 kcal Electronic energy + Delta-G solvation = -17524.813194 eV Core-core repulsion = 14603.084352 eV Total energy + Delta-G solvation = -2921.728842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05212 -38.43779 -36.45895 -35.55736 -32.71873 -31.54271 -30.86736 -28.81590 -27.54038 -24.40948 -22.70760 -22.05079 -19.81489 -19.41404 -17.32509 -16.85689 -16.08060 -15.32403 -14.91363 -14.71762 -14.42894 -13.87899 -13.47137 -13.33015 -13.05608 -12.72447 -12.54749 -12.04832 -11.72490 -11.49937 -11.41337 -11.15982 -11.03269 -10.76890 -10.66295 -10.56825 -10.05915 -9.80912 -9.00015 -8.87369 -8.70577 -8.31206 -7.71940 -6.32930 -4.43897 1.31485 1.46543 2.21192 3.17266 3.23765 3.25217 3.58870 3.80345 4.21079 4.61078 4.90778 5.01694 5.03479 5.12656 5.37401 5.48203 5.55698 5.61368 5.76141 5.96458 6.02430 6.19762 6.30997 6.36946 6.46599 6.55298 6.88636 6.99068 7.09908 7.60047 7.89995 8.06388 8.26223 8.67461 9.27615 9.41516 10.74435 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.005409 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.023938 B = 5174.951606 C = 5660.273300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.264 3.736 10 H 0.051 0.949 11 N -0.688 5.688 12 C 0.505 3.495 13 O -0.584 6.584 14 C -0.139 4.139 15 C -0.066 4.066 16 H 0.099 0.901 17 C -0.052 4.052 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.045 4.045 21 Cl -0.086 7.086 22 C -0.112 4.112 23 C -0.103 4.103 24 H 0.268 0.732 25 H 0.408 0.592 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -10.714 -5.361 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.162 3.838 10 H 0.069 0.931 11 N -0.339 5.339 12 C 0.290 3.710 13 O -0.467 6.467 14 C -0.179 4.179 15 C -0.085 4.085 16 H 0.117 0.883 17 C -0.052 4.052 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.071 4.071 21 Cl -0.057 7.057 22 C -0.131 4.131 23 C -0.122 4.122 24 H 0.078 0.922 25 H 0.246 0.754 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.838 -10.889 -4.953 12.295 hybrid contribution -0.009 1.140 -0.115 1.146 sum 2.829 -9.748 -5.068 11.346 Atomic orbital electron populations 1.69821 1.06162 1.27798 1.48377 1.25028 0.94917 0.99653 0.93340 0.86517 0.79606 0.82262 0.78855 1.19906 1.21133 1.20016 1.21350 0.93341 0.90022 1.53055 0.91576 1.19327 0.88212 0.91181 0.85035 0.93109 1.46930 1.23882 1.44623 1.18497 1.20762 0.86506 0.79525 0.84168 1.90630 1.69581 1.64574 1.21912 1.22275 0.98183 1.01848 0.95636 1.21354 1.01242 0.92711 0.93216 0.88261 1.20096 0.94232 0.95660 0.95209 1.21133 0.95747 0.94869 0.99873 1.21008 1.00065 0.96906 0.94818 1.20850 0.96713 0.92455 0.97088 1.98342 1.86935 1.43087 1.77343 1.20967 0.94722 0.96825 1.00577 1.21045 1.00282 0.95468 0.95357 0.92213 0.75373 0.88257 0.89827 0.85145 0.85344 0.85322 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.94 12.45 55.43 0.69 -22.25 16 2 C 0.08 1.89 5.40 -17.82 -0.10 1.80 16 3 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -12.94 8.75 -34.44 -0.30 -13.24 16 8 H 0.07 1.53 7.56 -52.49 -0.40 1.14 16 9 C 0.26 5.69 2.63 -68.16 -0.18 5.51 16 10 H 0.05 1.19 7.90 -51.93 -0.41 0.78 16 11 N -0.69 -15.22 5.07 -53.88 -0.27 -15.50 16 12 C 0.50 10.95 6.88 -10.86 -0.07 10.88 16 13 O -0.58 -14.42 18.03 5.56 0.10 -14.32 16 14 C -0.14 -2.47 6.10 -26.74 -0.16 -2.63 16 15 C -0.07 -1.15 2.94 -90.14 -0.27 -1.41 16 16 H 0.10 1.60 7.55 -51.93 -0.39 1.21 16 17 C -0.05 -0.81 4.71 -104.62 -0.49 -1.31 16 18 C -0.10 -1.56 8.87 -39.59 -0.35 -1.91 16 19 C -0.11 -1.56 9.83 -39.55 -0.39 -1.95 16 20 C -0.04 -0.60 6.32 -39.50 -0.25 -0.85 16 21 Cl -0.09 -1.04 28.96 -51.86 -1.50 -2.54 16 22 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 23 C -0.10 -1.40 9.68 -39.59 -0.38 -1.78 16 24 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 25 H 0.41 9.50 8.39 -40.82 -0.34 9.16 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.08 1.34 7.86 -51.93 -0.41 0.93 16 28 H 0.13 2.26 6.07 -52.48 -0.32 1.94 16 29 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.52 7.99 -52.49 -0.42 1.10 16 LS Contribution 283.18 15.07 4.27 4.27 Total: -1.00 -27.22 283.18 -8.16 -35.38 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.09 Total: 9.04 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.33 Total: -8.72 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.42 Total: -37.74 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.10 Total: -14.32 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.22 -8.16 -35.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.564 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds