Wall clock time and date at job start Mon Mar 30 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99647 * 2 1 4 4 H 1.48502 * 109.46937 * 239.99312 * 3 2 1 5 5 H 1.48493 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47292 * 119.99798 * 3 2 1 7 7 C 1.37880 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00277 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.21987 * 60.46793 * 9 7 2 11 11 N 1.46764 * 110.24421 * 298.54373 * 9 7 2 12 12 C 1.34424 * 111.30306 * 257.92773 * 11 9 7 13 13 O 1.21279 * 124.94294 * 179.32549 * 12 11 9 14 14 C 1.51281 * 110.11017 * 359.59326 * 12 11 9 15 15 C 1.54484 * 110.32256 * 182.45312 * 9 7 2 16 16 H 1.09000 * 110.96325 * 335.46597 * 15 9 7 17 17 C 1.50699 * 110.96770 * 211.74068 * 15 9 7 18 18 C 1.38236 * 119.98839 * 299.72047 * 17 15 9 19 19 C 1.38215 * 120.01222 * 179.72605 * 18 17 15 20 20 C 1.38348 * 119.98404 * 0.55232 * 19 18 17 21 21 Cl 1.73602 * 120.01064 * 179.74557 * 20 19 18 22 22 C 1.38355 * 119.97851 * 359.72342 * 20 19 18 23 23 C 1.38216 * 119.98360 * 0.02562 * 22 20 19 24 24 H 0.96997 * 120.00231 * 0.02562 * 1 2 3 25 25 H 0.97006 * 124.35221 * 77.95182 * 11 9 7 26 26 H 1.09000 * 110.48574 * 102.42830 * 14 12 11 27 27 H 1.09001 * 110.48867 * 225.06693 * 14 12 11 28 28 H 1.08005 * 119.99074 * 0.02562 * 18 17 15 29 29 H 1.07999 * 120.00920 * 180.27415 * 19 18 17 30 30 H 1.07999 * 120.01086 * 179.97438 * 22 20 19 31 31 H 1.07994 * 119.99248 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6265 -2.5736 -0.8896 11 7 0.4270 -2.6097 1.2098 12 6 0.9989 -3.4188 2.1183 13 8 0.5359 -3.6748 3.2096 14 6 2.3073 -3.9582 1.5839 15 6 2.2364 -3.6874 0.0632 16 1 3.2133 -3.4051 -0.3293 17 6 1.6873 -4.8825 -0.6725 18 6 0.4933 -5.4522 -0.2714 19 6 -0.0135 -6.5448 -0.9494 20 6 0.6800 -7.0754 -2.0224 21 17 0.0473 -8.4518 -2.8703 22 6 1.8779 -6.5084 -2.4199 23 6 2.3811 -5.4126 -1.7444 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4217 -2.1574 1.3371 26 1 3.1489 -3.4261 2.0273 27 1 2.3864 -5.0280 1.7775 28 1 -0.0459 -5.0403 0.5689 29 1 -0.9486 -6.9870 -0.6387 30 1 2.4199 -6.9224 -3.2572 31 1 3.3159 -4.9696 -2.0548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:53 Heat of formation + Delta-G solvation = -47.181596 kcal Electronic energy + Delta-G solvation = -17525.479525 eV Core-core repulsion = 14603.084352 eV Total energy + Delta-G solvation = -2922.395173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50936 -39.77837 -37.68157 -37.08381 -34.49089 -33.03206 -31.96348 -30.14637 -29.30947 -26.00518 -23.87936 -23.39409 -21.20368 -21.08285 -18.97005 -18.25782 -17.64557 -16.66559 -16.48483 -16.14362 -15.86582 -15.50095 -14.76912 -14.48995 -14.34844 -14.32683 -14.16244 -13.41635 -13.21309 -12.99383 -12.80675 -12.63083 -12.36105 -12.29397 -12.05128 -11.74549 -11.70175 -11.40275 -10.79809 -10.55253 -9.94962 -9.59325 -9.40773 -8.20965 -6.36988 0.19469 0.38317 1.17911 1.44681 1.47038 1.52791 1.87714 2.40049 2.66800 2.85074 3.29681 3.75319 3.79711 3.95023 3.99509 4.04414 4.37591 4.43729 4.50419 4.74665 4.79980 4.92278 5.02711 5.18336 5.24749 5.29547 5.39529 5.69917 5.70216 5.88386 6.09471 6.28130 6.47996 6.85294 7.37612 7.61935 8.84718 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.005409 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.023938 B = 5174.951606 C = 5660.273300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.262 3.738 10 H 0.027 0.973 11 N -0.692 5.692 12 C 0.498 3.502 13 O -0.620 6.620 14 C -0.129 4.129 15 C -0.050 4.050 16 H 0.119 0.881 17 C -0.068 4.068 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.047 4.047 21 Cl -0.072 7.072 22 C -0.107 4.107 23 C -0.097 4.097 24 H 0.265 0.735 25 H 0.396 0.604 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.157 0.843 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -11.689 -6.666 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.094 0.906 9 C 0.160 3.840 10 H 0.045 0.955 11 N -0.340 5.340 12 C 0.285 3.715 13 O -0.506 6.506 14 C -0.169 4.169 15 C -0.069 4.069 16 H 0.137 0.863 17 C -0.069 4.069 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.074 4.074 21 Cl -0.043 7.043 22 C -0.125 4.125 23 C -0.115 4.115 24 H 0.074 0.926 25 H 0.232 0.768 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.861 -11.875 -6.280 14.286 hybrid contribution -0.693 1.373 0.242 1.557 sum 4.168 -10.503 -6.038 12.811 Atomic orbital electron populations 1.69938 1.07366 1.28044 1.49903 1.25761 0.95550 1.02643 0.93507 0.85635 0.78349 0.78819 0.78983 1.18761 1.21822 1.20094 1.21778 0.94005 0.90950 1.51763 0.90599 1.19280 0.88433 0.92490 0.83763 0.95533 1.46983 1.23530 1.44458 1.19022 1.21422 0.87648 0.78918 0.83476 1.90596 1.70857 1.65702 1.23432 1.22276 0.95821 1.03018 0.95774 1.21226 1.00819 0.91654 0.93202 0.86278 1.20011 0.94706 0.95686 0.96455 1.21018 0.96288 0.95932 0.99999 1.21095 1.00601 0.96609 0.95167 1.20998 0.96928 0.92735 0.96718 1.98350 1.86842 1.42249 1.76877 1.21299 0.94255 0.96124 1.00812 1.21304 1.00837 0.95273 0.94057 0.92639 0.76788 0.86924 0.87765 0.87438 0.84526 0.82497 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.32 12.45 21.45 0.27 -48.06 16 2 C 0.03 1.35 5.40 84.65 0.46 1.81 16 3 Si 0.96 40.02 29.54 68.60 2.03 42.05 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.55 -25.84 8.75 25.60 0.22 -25.62 16 8 H 0.08 3.37 7.56 -2.91 -0.02 3.35 16 9 C 0.26 11.29 2.63 44.70 0.12 11.41 16 10 H 0.03 1.27 7.90 -2.39 -0.02 1.25 16 11 N -0.69 -31.34 5.07 -442.97 -2.24 -33.58 16 12 C 0.50 21.80 6.88 87.90 0.60 22.40 16 13 O -0.62 -31.22 18.03 -3.02 -0.05 -31.28 16 14 C -0.13 -4.38 6.10 30.59 0.19 -4.20 16 15 C -0.05 -1.66 2.94 -10.48 -0.03 -1.69 16 16 H 0.12 3.46 7.55 -2.39 -0.02 3.44 16 17 C -0.07 -2.04 4.71 -19.86 -0.09 -2.13 16 18 C -0.11 -3.59 8.87 22.26 0.20 -3.40 16 19 C -0.12 -3.20 9.83 22.29 0.22 -2.98 16 20 C -0.05 -1.17 6.32 22.32 0.14 -1.03 16 21 Cl -0.07 -1.57 28.96 -2.72 -0.08 -1.65 16 22 C -0.11 -2.35 9.83 22.29 0.22 -2.13 16 23 C -0.10 -2.30 9.68 22.27 0.22 -2.09 16 24 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 25 H 0.40 19.32 8.39 -92.70 -0.78 18.54 16 26 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.10 3.13 7.86 -2.39 -0.02 3.11 16 28 H 0.11 3.85 6.07 -2.91 -0.02 3.83 16 29 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.16 2.92 7.99 -2.91 -0.02 2.89 16 Total: -1.00 -58.46 283.18 2.76 -55.70 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.39 Total: 26.46 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 2.46 Total: -9.64 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.98 Total: -81.64 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.28 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -58.46 2.76 -55.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.515 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds