Wall clock time and date at job start Mon Mar 30 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47016 * 300.00024 * 3 2 1 6 6 H 1.48497 * 109.46792 * 59.99929 * 3 2 1 7 7 C 1.37877 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.28262 * 301.97288 * 9 7 2 11 11 N 1.46766 * 110.24672 * 63.94716 * 9 7 2 12 12 C 1.34417 * 111.29425 * 136.02063 * 11 9 7 13 13 O 1.21285 * 124.93792 * 179.56240 * 12 11 9 14 14 C 1.51277 * 110.12014 * 359.58870 * 12 11 9 15 15 C 1.54473 * 110.24806 * 180.02562 * 9 7 2 16 16 H 1.09001 * 111.00516 * 97.44388 * 15 9 7 17 17 C 1.50707 * 110.96627 * 333.69856 * 15 9 7 18 18 C 1.38238 * 119.98854 * 306.14404 * 17 15 9 19 19 C 1.38214 * 120.01487 * 180.02562 * 18 17 15 20 20 C 1.38355 * 119.98457 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 120.00993 * 179.97438 * 20 19 18 22 22 C 1.38352 * 119.97427 * 0.02562 * 20 19 18 23 23 C 1.38210 * 119.98717 * 359.97438 * 22 20 19 24 24 H 0.96996 * 120.00672 * 359.97438 * 1 2 3 25 25 H 0.97000 * 124.35030 * 316.03862 * 11 9 7 26 26 H 1.08998 * 110.49015 * 225.06768 * 14 12 11 27 27 H 1.09007 * 110.59683 * 102.48627 * 14 12 11 28 28 H 1.08001 * 119.99123 * 0.02778 * 18 17 15 29 29 H 1.08000 * 120.00940 * 180.27418 * 19 18 17 30 30 H 1.08002 * 120.00192 * 179.97438 * 22 20 19 31 31 H 1.07996 * 119.99586 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.5930 -2.5555 0.8676 11 7 0.4740 -2.6369 -1.2368 12 6 0.5881 -3.8742 -1.7497 13 8 0.0430 -4.2592 -2.7624 14 6 1.4947 -4.7166 -0.8797 15 6 2.2391 -3.6867 0.0018 16 1 2.3868 -4.0709 1.0111 17 6 3.5543 -3.2947 -0.6209 18 6 3.5811 -2.7376 -1.8858 19 6 4.7870 -2.3784 -2.4576 20 6 5.9676 -2.5770 -1.7640 21 17 7.4827 -2.1267 -2.4819 22 6 5.9402 -3.1356 -0.4985 23 6 4.7337 -3.4944 0.0722 24 1 -0.4851 0.8400 0.0004 25 1 -0.0540 -1.9264 -1.6335 26 1 2.2013 -5.2752 -1.4935 27 1 0.9089 -5.3958 -0.2602 28 1 2.6595 -2.5829 -2.4272 29 1 4.8075 -1.9391 -3.4440 30 1 6.8615 -3.2913 0.0431 31 1 4.7121 -3.9308 1.0598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248497.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:55 Heat of formation + Delta-G solvation = -28.016771 kcal Electronic energy + Delta-G solvation = -17911.267988 eV Core-core repulsion = 14989.703865 eV Total energy + Delta-G solvation = -2921.564124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.06418 -38.31040 -36.33850 -35.50963 -32.71862 -31.55257 -30.62552 -28.81969 -27.53383 -24.19845 -22.42298 -22.14428 -19.71629 -19.45864 -17.22630 -16.67841 -15.96347 -15.44043 -14.79147 -14.67167 -14.48025 -13.80112 -13.26974 -13.12665 -12.93408 -12.64687 -12.37557 -12.19129 -11.99028 -11.62974 -11.12810 -11.09844 -11.01636 -10.62892 -10.52305 -10.46149 -10.02985 -9.64549 -9.09129 -8.76025 -8.58983 -7.99648 -7.74835 -6.35756 -4.44617 1.57527 1.73845 2.41451 3.14135 3.25028 3.29966 3.50506 4.05313 4.20928 4.55338 4.99610 5.09775 5.21437 5.24463 5.40593 5.48213 5.73127 5.80017 5.83786 6.02725 6.11777 6.18906 6.37933 6.46041 6.59548 6.69180 7.06094 7.17237 7.26471 7.63161 7.74897 8.02607 8.30912 8.69638 9.26676 9.35807 10.71567 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.008906 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.134368 B = 3143.088752 C = 4339.024994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.257 3.743 10 H 0.051 0.949 11 N -0.689 5.689 12 C 0.497 3.503 13 O -0.581 6.581 14 C -0.149 4.149 15 C -0.065 4.065 16 H 0.091 0.909 17 C -0.026 4.026 18 C -0.070 4.070 19 C -0.116 4.116 20 C -0.045 4.045 21 Cl -0.092 7.092 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.267 0.733 25 H 0.412 0.588 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -5.294 0.875 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.156 3.844 10 H 0.068 0.932 11 N -0.341 5.341 12 C 0.282 3.718 13 O -0.464 6.464 14 C -0.190 4.190 15 C -0.084 4.084 16 H 0.109 0.891 17 C -0.026 4.026 18 C -0.088 4.088 19 C -0.135 4.135 20 C -0.071 4.071 21 Cl -0.064 7.064 22 C -0.136 4.136 23 C -0.129 4.129 24 H 0.077 0.923 25 H 0.251 0.749 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.854 -5.392 0.391 10.374 hybrid contribution 0.342 1.528 -0.112 1.570 sum 9.195 -3.864 0.279 9.978 Atomic orbital electron populations 1.69879 1.06026 1.27578 1.48831 1.25069 0.94843 0.99666 0.93504 0.86503 0.80522 0.83190 0.77822 1.19297 1.20806 1.20771 1.21467 0.93782 0.89406 1.51916 0.90657 1.19417 0.88234 0.92417 0.84355 0.93186 1.47140 1.48202 1.11620 1.27106 1.20867 0.81832 0.84248 0.84806 1.90641 1.52605 1.76634 1.26544 1.22398 0.99161 0.98277 0.99121 1.21323 0.92304 0.96613 0.98175 0.89088 1.19604 0.94131 0.95342 0.93545 1.21040 0.97174 0.95459 0.95115 1.20968 0.90944 1.01274 1.00309 1.20798 0.86194 1.04784 0.95351 1.98326 1.32489 1.91732 1.83829 1.20840 0.98635 1.00398 0.93749 1.20923 0.91179 1.01041 0.99806 0.92309 0.74868 0.89344 0.88643 0.85048 0.85711 0.85749 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.53 12.38 55.43 0.69 -21.85 16 2 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 3 Si 0.89 19.72 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -12.25 7.41 -34.44 -0.26 -12.51 16 8 H 0.08 1.77 5.78 -52.49 -0.30 1.47 16 9 C 0.26 5.41 3.01 -68.16 -0.21 5.21 16 10 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 11 N -0.69 -14.92 5.04 -53.88 -0.27 -15.19 16 12 C 0.50 10.38 7.13 -10.86 -0.08 10.30 16 13 O -0.58 -13.97 18.03 5.55 0.10 -13.87 16 14 C -0.15 -2.47 6.19 -26.73 -0.17 -2.64 16 15 C -0.07 -1.10 3.33 -90.12 -0.30 -1.40 16 16 H 0.09 1.33 7.96 -51.93 -0.41 0.91 16 17 C -0.03 -0.44 3.08 -104.62 -0.32 -0.76 16 18 C -0.07 -1.26 7.48 -39.59 -0.30 -1.56 16 19 C -0.12 -1.94 9.83 -39.55 -0.39 -2.33 16 20 C -0.04 -0.70 6.32 -39.50 -0.25 -0.95 16 21 Cl -0.09 -1.29 28.96 -51.86 -1.50 -2.80 16 22 C -0.12 -1.71 9.83 -39.55 -0.39 -2.10 16 23 C -0.11 -1.66 9.68 -39.59 -0.38 -2.04 16 24 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 25 H 0.41 9.64 8.13 -40.82 -0.33 9.30 16 26 H 0.09 1.38 7.90 -51.93 -0.41 0.96 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.13 2.61 6.09 -52.49 -0.32 2.29 16 29 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.56 7.98 -52.49 -0.42 1.15 16 LS Contribution 278.51 15.07 4.20 4.20 Total: -1.00 -26.70 278.51 -7.96 -34.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.02 Total: 9.23 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.13 Total: -9.08 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.41 Total: -37.03 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.10 Total: -13.87 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.70 -7.96 -34.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248497.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.644 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds