Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48499 * 109.47487 * 270.00242 * 3 2 1 5 5 H 1.48503 * 109.46678 * 30.00197 * 3 2 1 6 6 H 1.48506 * 109.47169 * 149.99575 * 3 2 1 7 7 C 1.37881 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99791 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00479 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.85526 * 62.33619 * 9 7 2 11 11 C 1.54626 * 110.96632 * 298.54510 * 9 7 2 12 12 C 1.51281 * 104.19628 * 217.04216 * 11 9 7 13 13 O 1.21290 * 124.94814 * 196.23344 * 12 11 9 14 14 N 1.34421 * 110.11410 * 16.25366 * 12 11 9 15 15 C 1.39924 * 124.34923 * 180.40344 * 14 12 11 16 16 C 1.38896 * 120.06521 * 354.29190 * 15 14 12 17 17 C 1.38099 * 119.95917 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.07920 * 0.02562 * 17 16 15 19 19 C 1.38382 * 120.12979 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 119.97671 * 179.74635 * 19 18 17 21 21 C 1.38251 * 120.04316 * 0.02562 * 19 18 17 22 22 C 1.46758 * 111.29916 * 0.67322 * 14 12 11 23 23 H 0.96996 * 120.00284 * 359.97438 * 1 2 3 24 24 H 1.09008 * 110.48902 * 98.37010 * 11 9 7 25 25 H 1.08995 * 110.49087 * 335.72145 * 11 9 7 26 26 H 1.07999 * 120.02264 * 0.02562 * 16 15 14 27 27 H 1.08000 * 119.96226 * 180.02562 * 17 16 15 28 28 H 1.08000 * 119.93796 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.04429 * 179.97438 * 21 19 18 30 30 H 1.09001 * 110.24743 * 101.71674 * 22 14 12 31 31 H 1.09002 * 110.24908 * 223.71425 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8992 -0.7218 0.9026 11 6 4.0653 -0.5033 -1.2676 12 6 5.2913 -1.3139 -1.6263 13 8 6.1676 -0.9507 -2.3821 14 7 5.2680 -2.4953 -0.9856 15 6 6.2627 -3.4732 -1.0963 16 6 7.3052 -3.3063 -1.9988 17 6 8.2860 -4.2726 -2.1059 18 6 8.2311 -5.4064 -1.3161 19 6 7.1940 -5.5763 -0.4158 20 17 7.1255 -7.0042 0.5690 21 6 6.2094 -4.6122 -0.3043 22 6 4.0622 -2.6304 -0.1601 23 1 -0.4850 0.8400 0.0004 24 1 4.3406 0.5288 -1.0504 25 1 3.3331 -0.5421 -2.0741 26 1 7.3492 -2.4210 -2.6158 27 1 9.0969 -4.1427 -2.8074 28 1 8.9991 -6.1608 -1.4021 29 1 5.3998 -4.7450 0.3980 30 1 3.3307 -3.2640 -0.6617 31 1 4.3170 -3.0463 0.8147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261583.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = -10.664639 kcal Electronic energy + Delta-G solvation = -17350.201551 eV Core-core repulsion = 14429.389872 eV Total energy + Delta-G solvation = -2920.811679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.77371 -38.62476 -36.52400 -36.30500 -33.73628 -31.91219 -30.78679 -29.12741 -27.37008 -25.22682 -22.98488 -22.42229 -20.22663 -19.63759 -17.67756 -17.04292 -16.45144 -15.80569 -15.27564 -15.10948 -14.32680 -14.28389 -13.68715 -13.62076 -13.38932 -13.18841 -12.87882 -12.67831 -12.05712 -11.59309 -11.57573 -11.18551 -11.07008 -10.92133 -10.74411 -10.42096 -10.18059 -9.81105 -9.55357 -9.14937 -8.84228 -8.77725 -7.82020 -6.30088 -4.34283 1.16823 1.21139 2.03281 2.84960 3.08979 3.15913 3.23206 3.27417 3.75412 4.21227 4.68963 4.93530 4.96681 5.01969 5.22303 5.24446 5.38333 5.54353 5.65201 5.69975 5.92545 6.04907 6.13566 6.15159 6.30269 6.40119 6.49587 6.57328 6.99027 7.09022 7.25290 7.42993 8.22258 8.34845 8.70892 9.29124 10.81873 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.005213 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.906236 B = 5370.386452 C = 6133.782614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.013 3.987 10 H 0.052 0.948 11 C -0.165 4.165 12 C 0.523 3.477 13 O -0.529 6.529 14 N -0.560 5.560 15 C 0.193 3.807 16 C -0.161 4.161 17 C -0.080 4.080 18 C -0.149 4.149 19 C -0.005 4.005 20 Cl -0.074 7.074 21 C -0.156 4.156 22 C 0.106 3.894 23 H 0.268 0.732 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.160 0.840 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 -8.763 -0.886 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.101 0.899 9 C -0.007 4.007 10 H 0.070 0.930 11 C -0.205 4.205 12 C 0.315 3.685 13 O -0.407 6.407 14 N -0.282 5.282 15 C 0.097 3.903 16 C -0.181 4.181 17 C -0.098 4.098 18 C -0.169 4.169 19 C -0.032 4.032 20 Cl -0.045 7.045 21 C -0.178 4.178 22 C -0.015 4.015 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.178 0.822 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.476 -8.541 -1.184 15.999 hybrid contribution 0.273 0.729 0.152 0.793 sum 13.750 -7.812 -1.032 15.848 Atomic orbital electron populations 1.69861 1.06271 1.27460 1.48921 1.24932 0.94673 0.98968 0.93826 0.87046 0.80191 0.83831 0.79013 1.19729 1.21409 1.18827 1.20757 0.87069 0.95117 1.52929 0.89925 1.20221 0.98018 0.89411 0.93005 0.92975 1.23072 0.94637 0.99375 1.03452 1.21624 0.87660 0.81263 0.77956 1.90525 1.40546 1.73483 1.36117 1.46192 1.21026 1.15480 1.45478 1.17753 0.89200 0.88580 0.94805 1.21817 0.94150 1.02266 0.99908 1.20969 0.98187 0.92568 0.98115 1.20931 0.98673 0.99537 0.97727 1.20543 0.97257 0.89355 0.96089 1.98361 1.98263 1.38332 1.69569 1.20649 1.00915 0.93621 1.02570 1.22602 0.83343 1.01506 0.93999 0.92169 0.89472 0.86709 0.82230 0.84941 0.85242 0.84366 0.89761 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.87 19.64 24.73 -169.99 -4.20 15.44 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.65 6.40 56.52 0.36 -5.29 16 7 C -0.52 -12.83 9.00 -34.44 -0.31 -13.14 16 8 H 0.08 2.19 7.91 -52.49 -0.41 1.77 16 9 C 0.01 0.26 2.54 -90.05 -0.23 0.03 16 10 H 0.05 1.07 7.41 -51.93 -0.38 0.69 16 11 C -0.17 -3.29 4.67 -26.74 -0.12 -3.42 16 12 C 0.52 10.14 7.92 -10.86 -0.09 10.05 16 13 O -0.53 -10.93 14.81 5.55 0.08 -10.85 16 14 N -0.56 -9.86 3.14 -112.17 -0.35 -10.21 16 15 C 0.19 3.10 6.60 -83.70 -0.55 2.55 16 16 C -0.16 -2.45 9.29 -39.39 -0.37 -2.82 16 17 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 18 C -0.15 -1.74 9.83 -39.51 -0.39 -2.13 16 19 C -0.01 -0.07 6.32 -39.52 -0.25 -0.32 16 20 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 16 21 C -0.16 -2.22 9.20 -39.36 -0.36 -2.58 16 22 C 0.11 1.85 6.06 -3.03 -0.02 1.83 16 23 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.09 1.73 5.80 -51.92 -0.30 1.43 16 25 H 0.11 2.33 7.89 -51.93 -0.41 1.92 16 26 H 0.16 2.68 5.25 -52.49 -0.28 2.40 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.14 1.84 6.74 -52.49 -0.35 1.49 16 30 H 0.08 1.46 7.79 -51.93 -0.40 1.06 16 31 H 0.07 1.15 7.23 -51.93 -0.38 0.77 16 LS Contribution 273.56 15.07 4.12 4.12 Total: -1.00 -27.37 273.56 -7.20 -34.57 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.94 Total: 2.83 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.18 Total: -9.32 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.42 Total: -34.42 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.20 Total: 15.44 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.37 -7.20 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261583.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.903 kcal (2) G-P(sol) polarization free energy of solvation -27.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds