Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48499 * 109.47487 * 270.00242 * 3 2 1 5 5 H 1.48503 * 109.46678 * 30.00197 * 3 2 1 6 6 H 1.48506 * 109.47169 * 149.99575 * 3 2 1 7 7 C 1.37881 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99791 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00479 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.85526 * 62.33619 * 9 7 2 11 11 C 1.54626 * 110.96632 * 298.54510 * 9 7 2 12 12 C 1.51281 * 104.19628 * 217.04216 * 11 9 7 13 13 O 1.21290 * 124.94814 * 196.23344 * 12 11 9 14 14 N 1.34421 * 110.11410 * 16.25366 * 12 11 9 15 15 C 1.39924 * 124.34923 * 180.40344 * 14 12 11 16 16 C 1.38896 * 120.06521 * 354.29190 * 15 14 12 17 17 C 1.38099 * 119.95917 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.07920 * 0.02562 * 17 16 15 19 19 C 1.38382 * 120.12979 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 119.97671 * 179.74635 * 19 18 17 21 21 C 1.38251 * 120.04316 * 0.02562 * 19 18 17 22 22 C 1.46758 * 111.29916 * 0.67322 * 14 12 11 23 23 H 0.96996 * 120.00284 * 359.97438 * 1 2 3 24 24 H 1.09008 * 110.48902 * 98.37010 * 11 9 7 25 25 H 1.08995 * 110.49087 * 335.72145 * 11 9 7 26 26 H 1.07999 * 120.02264 * 0.02562 * 16 15 14 27 27 H 1.08000 * 119.96226 * 180.02562 * 17 16 15 28 28 H 1.08000 * 119.93796 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.04429 * 179.97438 * 21 19 18 30 30 H 1.09001 * 110.24743 * 101.71674 * 22 14 12 31 31 H 1.09002 * 110.24908 * 223.71425 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8992 -0.7218 0.9026 11 6 4.0653 -0.5033 -1.2676 12 6 5.2913 -1.3139 -1.6263 13 8 6.1676 -0.9507 -2.3821 14 7 5.2680 -2.4953 -0.9856 15 6 6.2627 -3.4732 -1.0963 16 6 7.3052 -3.3063 -1.9988 17 6 8.2860 -4.2726 -2.1059 18 6 8.2311 -5.4064 -1.3161 19 6 7.1940 -5.5763 -0.4158 20 17 7.1255 -7.0042 0.5690 21 6 6.2094 -4.6122 -0.3043 22 6 4.0622 -2.6304 -0.1601 23 1 -0.4850 0.8400 0.0004 24 1 4.3406 0.5288 -1.0504 25 1 3.3331 -0.5421 -2.0741 26 1 7.3492 -2.4210 -2.6158 27 1 9.0969 -4.1427 -2.8074 28 1 8.9991 -6.1608 -1.4021 29 1 5.3998 -4.7450 0.3980 30 1 3.3307 -3.2640 -0.6617 31 1 4.3170 -3.0463 0.8147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261583.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = -25.762995 kcal Electronic energy + Delta-G solvation = -17350.856264 eV Core-core repulsion = 14429.389872 eV Total energy + Delta-G solvation = -2921.466393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.14755 -39.77878 -37.88614 -37.45031 -35.34347 -33.61325 -31.84179 -30.45388 -28.89908 -26.89879 -24.16502 -23.66199 -21.79878 -20.98144 -19.19102 -18.66067 -17.65629 -17.18689 -16.64526 -16.49025 -15.89277 -15.55918 -14.94461 -14.93175 -14.77378 -14.61491 -14.52458 -14.08162 -13.24536 -12.91985 -12.76889 -12.69492 -12.55552 -12.42574 -12.04385 -11.91542 -11.75984 -11.40599 -11.08922 -10.85031 -10.63433 -9.87273 -9.03497 -8.31145 -6.38061 0.07119 0.15329 1.03733 1.36334 1.40339 1.42789 1.47587 1.78972 2.32456 2.66133 3.02422 3.33595 3.69721 3.86599 4.04111 4.13501 4.16666 4.18228 4.35252 4.50383 4.59791 4.64086 4.69965 4.93756 5.04423 5.18627 5.32667 5.37411 5.42670 5.52317 5.87602 5.93346 6.23227 6.69440 6.90045 7.28744 8.84209 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029942 B = 0.005213 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.906236 B = 5370.386452 C = 6133.782614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.028 3.972 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.011 3.989 10 H 0.060 0.940 11 C -0.163 4.163 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.556 5.556 15 C 0.163 3.837 16 C -0.175 4.175 17 C -0.071 4.071 18 C -0.135 4.135 19 C -0.011 4.011 20 Cl -0.061 7.061 21 C -0.157 4.157 22 C 0.115 3.885 23 H 0.268 0.732 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.081 0.919 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.881 -9.804 -0.720 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.009 4.009 10 H 0.078 0.922 11 C -0.203 4.203 12 C 0.314 3.686 13 O -0.426 6.426 14 N -0.278 5.278 15 C 0.069 3.931 16 C -0.196 4.196 17 C -0.090 4.090 18 C -0.154 4.154 19 C -0.039 4.039 20 Cl -0.032 7.032 21 C -0.178 4.178 22 C -0.006 4.006 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.160 0.840 27 H 0.182 0.818 28 H 0.178 0.822 29 H 0.161 0.839 30 H 0.099 0.901 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.139 -9.625 -1.009 18.818 hybrid contribution -0.492 0.857 0.105 0.993 sum 15.647 -8.768 -0.904 17.959 Atomic orbital electron populations 1.69995 1.08092 1.28250 1.51490 1.25671 0.95188 1.02405 0.93842 0.86188 0.79728 0.79699 0.79479 1.18978 1.21984 1.16599 1.20972 0.89326 0.93795 1.51094 0.92874 1.20113 0.95306 0.91871 0.93587 0.92230 1.22935 0.94930 0.99779 1.02693 1.21404 0.87219 0.81829 0.78160 1.90521 1.40997 1.74076 1.37029 1.46050 1.21314 1.15408 1.45026 1.17944 0.89528 0.89102 0.96535 1.21807 0.95100 1.02689 0.99965 1.21291 0.97879 0.91600 0.98204 1.21313 0.98458 0.99605 0.96063 1.20704 0.97196 0.89512 0.96444 1.98371 1.98228 1.37366 1.69225 1.20720 1.01495 0.93315 1.02311 1.22450 0.83409 0.99476 0.95274 0.92273 0.89093 0.87594 0.84046 0.81836 0.82200 0.83883 0.90104 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.26 13.96 21.45 0.30 -53.96 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.92 40.23 24.73 68.60 1.70 41.93 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.24 -9.64 6.40 99.48 0.64 -9.01 16 7 C -0.51 -25.63 9.00 25.60 0.23 -25.40 16 8 H 0.05 2.90 7.91 -2.91 -0.02 2.88 16 9 C 0.01 0.42 2.54 -10.42 -0.03 0.40 16 10 H 0.06 2.34 7.41 -2.39 -0.02 2.32 16 11 C -0.16 -6.39 4.67 30.59 0.14 -6.25 16 12 C 0.52 19.93 7.92 87.90 0.70 20.62 16 13 O -0.55 -22.39 14.81 -3.06 -0.05 -22.43 16 14 N -0.56 -19.05 3.14 -627.38 -1.97 -21.02 16 15 C 0.16 5.02 6.60 38.15 0.25 5.27 16 16 C -0.18 -5.05 9.29 22.39 0.21 -4.85 16 17 C -0.07 -1.51 10.04 22.25 0.22 -1.28 16 18 C -0.14 -2.64 9.83 22.32 0.22 -2.42 16 19 C -0.01 -0.26 6.32 22.31 0.14 -0.12 16 20 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 16 21 C -0.16 -4.14 9.20 22.42 0.21 -3.93 16 22 C 0.11 3.88 6.06 86.89 0.53 4.40 16 23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.09 3.47 5.80 -2.38 -0.01 3.45 16 25 H 0.11 4.31 7.89 -2.39 -0.02 4.29 16 26 H 0.14 4.65 5.25 -2.91 -0.02 4.64 16 27 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.14 3.53 6.74 -2.91 -0.02 3.51 16 30 H 0.08 2.78 7.79 -2.39 -0.02 2.77 16 31 H 0.10 2.86 7.23 -2.39 -0.02 2.85 16 Total: -1.00 -59.30 273.56 4.27 -55.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.09 Total: 13.38 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 3.28 Total: -11.61 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.67 Total: -74.98 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.70 Total: 41.93 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -59.30 4.27 -55.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261583.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.263 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds