Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48495 * 109.46760 * 269.99588 * 3 2 1 5 5 H 1.48497 * 109.47387 * 29.99832 * 3 2 1 6 6 H 1.48498 * 109.46847 * 149.99909 * 3 2 1 7 7 C 1.37880 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99595 * 180.27789 * 7 2 1 9 9 C 1.50698 * 119.99939 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.86226 * 297.66265 * 9 7 2 11 11 C 1.54629 * 110.96889 * 61.45742 * 9 7 2 12 12 C 1.51282 * 104.19706 * 142.91277 * 11 9 7 13 13 O 1.21292 * 124.94230 * 163.71272 * 12 11 9 14 14 N 1.34416 * 110.11358 * 343.74454 * 12 11 9 15 15 C 1.39928 * 124.35037 * 179.60976 * 14 12 11 16 16 C 1.38906 * 120.06120 * 353.94343 * 15 14 12 17 17 C 1.38099 * 119.95423 * 179.78585 * 16 15 14 18 18 C 1.38279 * 120.08479 * 0.46876 * 17 16 15 19 19 C 1.38386 * 120.12387 * 359.78305 * 18 17 16 20 20 Cl 1.73600 * 119.97456 * 179.97438 * 19 18 17 21 21 C 1.38246 * 120.04642 * 359.97438 * 19 18 17 22 22 C 1.46762 * 111.30265 * 359.59556 * 14 12 11 23 23 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.48529 * 261.58981 * 11 9 7 25 25 H 1.09007 * 110.48396 * 24.10290 * 11 9 7 26 26 H 1.08004 * 120.02214 * 0.02562 * 16 15 14 27 27 H 1.08004 * 119.95753 * 180.20794 * 17 16 15 28 28 H 1.07995 * 119.93813 * 179.76418 * 18 17 16 29 29 H 1.08002 * 120.04090 * 179.97438 * 21 19 18 30 30 H 1.09001 * 110.24417 * 258.00917 * 22 14 12 31 31 H 1.09008 * 110.24598 * 136.01387 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0051 9 6 1.2509 -2.4991 0.0017 10 1 0.6477 -2.5982 0.9041 11 6 0.3763 -2.6342 -1.2663 12 6 0.4662 -4.1013 -1.6245 13 8 -0.2865 -4.6793 -2.3798 14 7 1.5011 -4.6710 -0.9834 15 6 1.8516 -6.0212 -1.0938 16 6 1.0399 -6.8948 -1.8060 17 6 1.3902 -8.2260 -1.9174 18 6 2.5430 -8.6923 -1.3126 19 6 3.3515 -7.8259 -0.5978 20 17 4.7976 -8.4156 0.1604 21 6 3.0085 -6.4913 -0.4872 22 6 2.2164 -3.6951 -0.1529 23 1 -0.4850 0.8401 0.0004 24 1 -0.6553 -2.3570 -1.0494 25 1 0.7748 -2.0176 -2.0720 26 1 0.1373 -6.5325 -2.2757 27 1 0.7608 -8.9046 -2.4740 28 1 2.8128 -9.7345 -1.3980 29 1 3.6393 -5.8154 0.0710 30 1 3.1336 -3.3778 -0.6492 31 1 2.4439 -4.1248 0.8228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -18.759976 kcal Electronic energy + Delta-G solvation = -17271.092225 eV Core-core repulsion = 14349.929506 eV Total energy + Delta-G solvation = -2921.162719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56718 -38.48147 -36.44289 -36.09309 -33.67081 -31.60740 -30.69513 -28.72968 -27.12127 -25.10348 -22.81096 -22.47978 -20.21371 -19.38694 -17.48856 -16.70668 -16.30343 -15.50370 -15.19312 -14.95101 -14.54632 -13.99861 -13.58646 -13.46543 -13.13511 -12.97035 -12.43028 -12.41466 -11.87539 -11.51333 -11.44152 -11.17192 -10.98656 -10.85812 -10.77036 -10.44757 -9.88771 -9.72959 -9.46758 -8.97911 -8.76618 -8.58830 -7.68711 -6.26293 -4.32999 1.25504 1.31059 2.09533 3.06315 3.19572 3.26250 3.28015 3.31937 3.86173 4.25733 4.82051 5.06593 5.08024 5.19198 5.36975 5.43326 5.49691 5.71278 5.82126 5.95231 6.17948 6.21257 6.24232 6.48128 6.49297 6.60504 6.72055 7.18733 7.22355 7.41344 7.48152 7.69871 8.03305 8.56788 8.69564 9.34329 10.83322 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.004951 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.952260 B = 5654.480102 C = 6549.756944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.048 3.952 10 H 0.049 0.951 11 C -0.125 4.125 12 C 0.514 3.486 13 O -0.535 6.535 14 N -0.562 5.562 15 C 0.195 3.805 16 C -0.162 4.162 17 C -0.080 4.080 18 C -0.152 4.152 19 C -0.005 4.005 20 Cl -0.077 7.077 21 C -0.159 4.159 22 C 0.096 3.904 23 H 0.265 0.735 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.160 0.840 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -12.595 -0.759 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.029 3.971 10 H 0.067 0.933 11 C -0.166 4.166 12 C 0.307 3.693 13 O -0.413 6.413 14 N -0.283 5.283 15 C 0.098 3.902 16 C -0.183 4.183 17 C -0.098 4.098 18 C -0.172 4.172 19 C -0.032 4.032 20 Cl -0.048 7.048 21 C -0.180 4.180 22 C -0.025 4.025 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.178 0.822 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.633 -12.753 -1.074 13.611 hybrid contribution 0.678 0.854 0.137 1.098 sum 5.311 -11.899 -0.937 13.064 Atomic orbital electron populations 1.69938 1.06005 1.27310 1.48807 1.24980 0.94909 0.99408 0.94310 0.86493 0.79822 0.82859 0.78302 1.20484 1.21088 1.19707 1.20922 0.93026 0.89314 1.52948 0.91711 1.19677 0.92019 0.91503 0.93898 0.93321 1.22472 1.04570 0.87625 1.01892 1.22243 0.77841 0.91729 0.77493 1.90499 1.44287 1.70032 1.36441 1.46300 1.30427 1.06342 1.45244 1.17813 0.93139 0.83731 0.95468 1.21827 1.02109 0.92955 1.01366 1.20962 0.95713 0.95137 0.98032 1.20899 0.95913 0.99581 1.00791 1.20537 0.89860 0.93556 0.99264 1.98354 1.37131 1.88508 1.80798 1.20627 0.97849 0.94607 1.04944 1.22745 0.97280 0.89166 0.93280 0.92480 0.88108 0.88218 0.82230 0.85021 0.85350 0.84543 0.90645 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.11 12.40 55.43 0.69 -22.42 16 2 C 0.07 1.69 5.34 -17.82 -0.10 1.60 16 3 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.52 -12.63 8.42 -34.44 -0.29 -12.92 16 8 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 9 C 0.05 1.05 3.08 -90.14 -0.28 0.77 16 10 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.13 -2.73 5.46 -26.74 -0.15 -2.88 16 12 C 0.51 10.68 7.92 -10.86 -0.09 10.59 16 13 O -0.53 -11.81 14.82 5.55 0.08 -11.73 16 14 N -0.56 -10.51 3.14 -112.27 -0.35 -10.87 16 15 C 0.20 3.32 6.60 -83.70 -0.55 2.77 16 16 C -0.16 -2.62 9.28 -39.38 -0.37 -2.99 16 17 C -0.08 -1.03 10.04 -39.62 -0.40 -1.43 16 18 C -0.15 -1.88 9.83 -39.51 -0.39 -2.27 16 19 C -0.01 -0.07 6.32 -39.52 -0.25 -0.32 16 20 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.43 16 21 C -0.16 -2.38 9.19 -39.36 -0.36 -2.74 16 22 C 0.10 1.76 5.81 -3.12 -0.02 1.75 16 23 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 24 H 0.10 2.33 7.98 -51.93 -0.41 1.91 16 25 H 0.10 2.25 7.89 -51.93 -0.41 1.84 16 26 H 0.16 2.85 5.27 -52.48 -0.28 2.58 16 27 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.93 7.01 -52.49 -0.37 1.56 16 30 H 0.08 1.34 7.78 -51.93 -0.40 0.94 16 31 H 0.07 1.14 7.70 -51.92 -0.40 0.74 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -26.04 281.30 -8.17 -34.21 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.08 Total: 2.56 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.23 Total: -8.06 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.34 Total: -33.28 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.04 -8.17 -34.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.450 kcal (2) G-P(sol) polarization free energy of solvation -26.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds