Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48495 * 109.46760 * 269.99588 * 3 2 1 5 5 H 1.48497 * 109.47387 * 29.99832 * 3 2 1 6 6 H 1.48498 * 109.46847 * 149.99909 * 3 2 1 7 7 C 1.37880 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99595 * 180.27789 * 7 2 1 9 9 C 1.50698 * 119.99939 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.86226 * 297.66265 * 9 7 2 11 11 C 1.54629 * 110.96889 * 61.45742 * 9 7 2 12 12 C 1.51282 * 104.19706 * 142.91277 * 11 9 7 13 13 O 1.21292 * 124.94230 * 163.71272 * 12 11 9 14 14 N 1.34416 * 110.11358 * 343.74454 * 12 11 9 15 15 C 1.39928 * 124.35037 * 179.60976 * 14 12 11 16 16 C 1.38906 * 120.06120 * 353.94343 * 15 14 12 17 17 C 1.38099 * 119.95423 * 179.78585 * 16 15 14 18 18 C 1.38279 * 120.08479 * 0.46876 * 17 16 15 19 19 C 1.38386 * 120.12387 * 359.78305 * 18 17 16 20 20 Cl 1.73600 * 119.97456 * 179.97438 * 19 18 17 21 21 C 1.38246 * 120.04642 * 359.97438 * 19 18 17 22 22 C 1.46762 * 111.30265 * 359.59556 * 14 12 11 23 23 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.48529 * 261.58981 * 11 9 7 25 25 H 1.09007 * 110.48396 * 24.10290 * 11 9 7 26 26 H 1.08004 * 120.02214 * 0.02562 * 16 15 14 27 27 H 1.08004 * 119.95753 * 180.20794 * 17 16 15 28 28 H 1.07995 * 119.93813 * 179.76418 * 18 17 16 29 29 H 1.08002 * 120.04090 * 179.97438 * 21 19 18 30 30 H 1.09001 * 110.24417 * 258.00917 * 22 14 12 31 31 H 1.09008 * 110.24598 * 136.01387 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0051 9 6 1.2509 -2.4991 0.0017 10 1 0.6477 -2.5982 0.9041 11 6 0.3763 -2.6342 -1.2663 12 6 0.4662 -4.1013 -1.6245 13 8 -0.2865 -4.6793 -2.3798 14 7 1.5011 -4.6710 -0.9834 15 6 1.8516 -6.0212 -1.0938 16 6 1.0399 -6.8948 -1.8060 17 6 1.3902 -8.2260 -1.9174 18 6 2.5430 -8.6923 -1.3126 19 6 3.3515 -7.8259 -0.5978 20 17 4.7976 -8.4156 0.1604 21 6 3.0085 -6.4913 -0.4872 22 6 2.2164 -3.6951 -0.1529 23 1 -0.4850 0.8401 0.0004 24 1 -0.6553 -2.3570 -1.0494 25 1 0.7748 -2.0176 -2.0720 26 1 0.1373 -6.5325 -2.2757 27 1 0.7608 -8.9046 -2.4740 28 1 2.8128 -9.7345 -1.3980 29 1 3.6393 -5.8154 0.0710 30 1 3.1336 -3.3778 -0.6492 31 1 2.4439 -4.1248 0.8228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -31.215379 kcal Electronic energy + Delta-G solvation = -17271.632332 eV Core-core repulsion = 14349.929506 eV Total energy + Delta-G solvation = -2921.702826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.03980 -39.72942 -37.78120 -37.42804 -35.32840 -33.22755 -31.82277 -30.14978 -28.77371 -26.82069 -24.07140 -23.78574 -21.83064 -20.81551 -18.99196 -18.40672 -17.57402 -16.97584 -16.64311 -16.50148 -15.98246 -15.35215 -14.75429 -14.72946 -14.70263 -14.57170 -14.16487 -13.90804 -13.11895 -12.93829 -12.73954 -12.64184 -12.54902 -12.48561 -12.18116 -11.89762 -11.46044 -11.33774 -11.07109 -10.74021 -10.41554 -9.86245 -8.99724 -8.17104 -6.28669 0.09487 0.16898 1.04497 1.47255 1.50178 1.51895 1.58520 1.86358 2.44493 2.67992 3.16060 3.52074 3.84257 3.98101 4.08326 4.16213 4.29037 4.35144 4.45978 4.59556 4.67646 4.79440 4.84637 5.09611 5.20668 5.37298 5.38983 5.45157 5.58761 5.78738 5.90034 5.99349 6.19089 6.78861 6.99628 7.41588 8.92375 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.004951 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.952260 B = 5654.480102 C = 6549.756944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.020 3.980 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.043 3.957 10 H 0.028 0.972 11 C -0.116 4.116 12 C 0.514 3.486 13 O -0.555 6.555 14 N -0.557 5.557 15 C 0.164 3.836 16 C -0.178 4.178 17 C -0.071 4.071 18 C -0.136 4.136 19 C -0.010 4.010 20 Cl -0.060 7.060 21 C -0.157 4.157 22 C 0.108 3.892 23 H 0.264 0.736 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.138 0.862 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -14.439 -0.595 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.024 3.976 10 H 0.046 0.954 11 C -0.157 4.157 12 C 0.306 3.694 13 O -0.435 6.435 14 N -0.279 5.279 15 C 0.069 3.931 16 C -0.199 4.199 17 C -0.089 4.089 18 C -0.156 4.156 19 C -0.037 4.037 20 Cl -0.031 7.031 21 C -0.179 4.179 22 C -0.013 4.013 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.103 0.897 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.610 -14.631 -0.895 16.080 hybrid contribution 0.127 1.272 0.105 1.283 sum 6.737 -13.359 -0.790 14.982 Atomic orbital electron populations 1.70061 1.07350 1.27782 1.50191 1.25716 0.95541 1.02490 0.94276 0.85556 0.78852 0.79160 0.78119 1.20411 1.21469 1.18718 1.21281 0.93552 0.90145 1.51868 0.90946 1.19581 0.92557 0.92638 0.92858 0.95404 1.22224 1.03197 0.88724 1.01539 1.21900 0.78521 0.91191 0.77786 1.90489 1.45261 1.70197 1.37503 1.46112 1.29664 1.07392 1.44720 1.18003 0.94716 0.82733 0.97651 1.21798 1.01648 0.94497 1.01934 1.21279 0.96144 0.94042 0.97484 1.21298 0.94699 1.00904 0.98651 1.20694 0.90602 0.93210 0.99237 1.98366 1.36089 1.88150 1.80477 1.20699 0.97086 0.95562 1.04524 1.22589 0.96268 0.87878 0.94532 0.92731 0.90287 0.89492 0.84399 0.81889 0.82114 0.83880 0.89716 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 12.40 21.45 0.27 -48.87 16 2 C 0.02 1.02 5.34 84.65 0.45 1.47 16 3 Si 0.96 40.05 29.54 68.60 2.03 42.08 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.53 -25.64 8.42 25.60 0.22 -25.43 16 8 H 0.07 3.32 7.66 -2.91 -0.02 3.30 16 9 C 0.04 1.91 3.08 -10.48 -0.03 1.88 16 10 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 11 C -0.12 -5.29 5.46 30.59 0.17 -5.12 16 12 C 0.51 21.97 7.92 87.90 0.70 22.66 16 13 O -0.55 -25.31 14.82 -3.07 -0.05 -25.36 16 14 N -0.56 -20.84 3.14 -627.69 -1.97 -22.81 16 15 C 0.16 5.42 6.60 38.15 0.25 5.67 16 16 C -0.18 -5.60 9.28 22.40 0.21 -5.39 16 17 C -0.07 -1.63 10.04 22.25 0.22 -1.41 16 18 C -0.14 -2.84 9.83 22.31 0.22 -2.62 16 19 C -0.01 -0.24 6.32 22.31 0.14 -0.10 16 20 Cl -0.06 -1.24 28.95 -2.72 -0.08 -1.32 16 21 C -0.16 -4.39 9.19 22.41 0.21 -4.18 16 22 C 0.11 3.90 5.81 86.83 0.50 4.40 16 23 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 24 H 0.08 3.88 7.98 -2.39 -0.02 3.86 16 25 H 0.09 4.11 7.89 -2.38 -0.02 4.09 16 26 H 0.14 4.98 5.27 -2.91 -0.02 4.97 16 27 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.14 3.71 7.01 -2.91 -0.02 3.69 16 30 H 0.08 2.91 7.78 -2.39 -0.02 2.89 16 31 H 0.09 2.87 7.70 -2.38 -0.02 2.85 16 Total: -1.00 -56.33 281.30 4.60 -51.73 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.15 Total: 12.73 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.25 Total: -8.17 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.70 Total: -71.68 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -56.33 4.60 -51.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.514 kcal (2) G-P(sol) polarization free energy of solvation -56.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds