Wall clock time and date at job start Mon Mar 30 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47285 * 89.99650 * 3 2 1 5 5 H 1.48502 * 109.47247 * 209.99610 * 3 2 1 6 6 H 1.48494 * 109.47210 * 329.99821 * 3 2 1 7 7 C 1.37880 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99352 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00217 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.21536 * 52.66742 * 9 7 2 11 11 N 1.46762 * 110.24633 * 290.64076 * 9 7 2 12 12 C 1.34425 * 111.29693 * 258.01477 * 11 9 7 13 13 O 1.21284 * 124.93580 * 179.55965 * 12 11 9 14 14 C 1.51281 * 110.11782 * 359.59510 * 12 11 9 15 15 C 1.54482 * 110.24545 * 174.58902 * 9 7 2 16 16 H 1.08996 * 110.97300 * 211.70496 * 15 9 7 17 17 C 1.50705 * 110.97031 * 335.43524 * 15 9 7 18 18 C 1.38231 * 120.00982 * 82.00092 * 17 15 9 19 19 C 1.38214 * 120.01458 * 179.77160 * 18 17 15 20 20 C 1.38260 * 120.02561 * 0.50521 * 19 18 17 21 21 C 1.38194 * 120.01535 * 359.75136 * 20 19 18 22 22 C 1.38335 * 120.00253 * 262.27977 * 17 15 9 23 23 Cl 1.73602 * 120.01136 * 359.95459 * 22 17 15 24 24 H 0.97002 * 119.99708 * 179.97438 * 1 2 3 25 25 H 0.96992 * 124.35150 * 78.01986 * 11 9 7 26 26 H 1.08994 * 110.48150 * 225.06958 * 14 12 11 27 27 H 1.08991 * 110.48679 * 102.42399 * 14 12 11 28 28 H 1.08003 * 119.99226 * 0.02562 * 18 17 15 29 29 H 1.08001 * 119.99465 * 180.23432 * 19 18 17 30 30 H 1.08002 * 119.99986 * 179.76857 * 20 19 18 31 31 H 1.08002 * 120.01248 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5259 -2.5154 -0.8130 11 7 0.5763 -2.6960 1.2889 12 6 1.2501 -3.5619 2.0656 13 8 0.9173 -3.8969 3.1828 14 6 2.4842 -4.0568 1.3440 15 6 2.2335 -3.6836 -0.1355 16 1 1.7736 -4.5120 -0.6742 17 6 3.5112 -3.2502 -0.8070 18 6 4.5038 -2.6313 -0.0705 19 6 5.6776 -2.2380 -0.6853 20 6 5.8554 -2.4539 -2.0393 21 6 4.8616 -3.0678 -2.7778 22 6 3.6884 -3.4664 -2.1618 23 17 2.4397 -4.2382 -3.0886 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.2497 -2.2578 1.5467 26 1 2.5827 -5.1367 1.4536 27 1 3.3739 -3.5515 1.7194 28 1 4.3638 -2.4587 0.9864 29 1 6.4544 -1.7579 -0.1087 30 1 6.7712 -2.1431 -2.5200 31 1 5.0007 -3.2368 -3.8354 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263193.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:58 Heat of formation + Delta-G solvation = -20.955147 kcal Electronic energy + Delta-G solvation = -18108.239525 eV Core-core repulsion = 15186.981616 eV Total energy + Delta-G solvation = -2921.257909 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09028 -38.47647 -36.08789 -35.83677 -32.83520 -31.98243 -30.42110 -28.75798 -27.04849 -24.49302 -22.31667 -22.24661 -19.90381 -19.58401 -17.69811 -16.61525 -16.31514 -15.27995 -14.90462 -14.53053 -14.09660 -14.00890 -13.60915 -13.48896 -12.92455 -12.69884 -12.55036 -12.10782 -11.91906 -11.37166 -11.20521 -11.05977 -10.91677 -10.49232 -10.35492 -10.24545 -10.08209 -9.47907 -9.12604 -8.65296 -8.44050 -8.20299 -7.67520 -6.57997 -4.38062 1.54161 1.64995 2.51730 3.32624 3.34224 3.46533 3.49984 3.97366 4.34503 4.46342 4.91647 4.99086 5.16269 5.26196 5.38285 5.52620 5.54075 5.70007 5.72669 5.95531 6.03207 6.26862 6.28158 6.34673 6.55733 6.71440 6.77975 6.90887 7.15302 7.78443 7.84953 8.02020 8.26575 8.58909 9.20334 9.37010 10.76249 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.010428 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.751961 B = 2684.336522 C = 3465.644036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.034 3.966 3 Si 1.065 2.935 4 H -0.286 1.286 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.610 4.610 8 H 0.076 0.924 9 C 0.245 3.755 10 H 0.048 0.952 11 N -0.708 5.708 12 C 0.513 3.487 13 O -0.579 6.579 14 C -0.146 4.146 15 C -0.061 4.061 16 H 0.085 0.915 17 C -0.013 4.013 18 C -0.086 4.086 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.031 4.031 23 Cl -0.079 7.079 24 H 0.268 0.732 25 H 0.398 0.602 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.675 -5.573 -5.525 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.893 3.107 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.648 4.648 8 H 0.094 0.906 9 C 0.144 3.856 10 H 0.066 0.934 11 N -0.360 5.360 12 C 0.298 3.702 13 O -0.461 6.461 14 C -0.186 4.186 15 C -0.080 4.080 16 H 0.103 0.897 17 C -0.015 4.015 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.134 4.134 22 C -0.057 4.057 23 Cl -0.050 7.050 24 H 0.079 0.921 25 H 0.236 0.764 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.281 -4.221 -5.130 11.414 hybrid contribution -0.324 -1.269 -0.082 1.313 sum 8.957 -5.491 -5.212 11.728 Atomic orbital electron populations 1.70842 1.07018 1.30563 1.44856 1.25862 0.96315 1.02883 0.92274 0.83580 0.75052 0.75121 0.76976 1.21305 1.21002 1.20849 1.22610 0.95540 0.90702 1.55990 0.90580 1.19406 0.90515 0.93205 0.82453 0.93445 1.47365 1.26145 1.43016 1.19461 1.20713 0.85273 0.79161 0.85007 1.90635 1.72958 1.62971 1.19547 1.22431 0.98730 1.02096 0.95294 1.21129 0.93824 0.99112 0.93984 0.89654 1.19202 0.94838 0.96095 0.91325 1.20985 0.92218 0.96524 1.00673 1.21127 0.97639 1.00232 0.94962 1.20918 0.98791 1.00147 0.94208 1.20859 0.92574 1.00069 0.99919 1.20667 0.90900 1.02441 0.91734 1.98329 1.53660 1.79817 1.73231 0.92096 0.76433 0.89499 0.87954 0.84894 0.85991 0.85910 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.62 55.43 0.76 -23.84 16 2 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 3 Si 1.06 23.58 29.90 -169.99 -5.08 18.49 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -14.75 8.02 -34.44 -0.28 -15.03 16 8 H 0.08 1.78 4.09 -52.48 -0.21 1.56 16 9 C 0.24 5.40 2.76 -68.16 -0.19 5.21 16 10 H 0.05 1.13 7.73 -51.93 -0.40 0.73 16 11 N -0.71 -15.78 5.61 -53.88 -0.30 -16.08 16 12 C 0.51 11.25 8.43 -10.86 -0.09 11.16 16 13 O -0.58 -14.34 18.03 5.55 0.10 -14.24 16 14 C -0.15 -2.63 6.28 -26.74 -0.17 -2.80 16 15 C -0.06 -1.14 2.94 -90.13 -0.26 -1.40 16 16 H 0.09 1.50 6.84 -51.93 -0.36 1.14 16 17 C -0.01 -0.24 4.07 -104.59 -0.43 -0.66 16 18 C -0.09 -1.42 6.42 -39.59 -0.25 -1.67 16 19 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 20 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 21 C -0.12 -1.66 9.83 -39.55 -0.39 -2.05 16 22 C -0.03 -0.51 6.31 -39.50 -0.25 -0.76 16 23 Cl -0.08 -1.25 27.27 -51.86 -1.41 -2.66 16 24 H 0.27 7.18 6.17 -40.82 -0.25 6.93 16 25 H 0.40 9.05 8.16 -40.82 -0.33 8.72 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.10 1.75 5.38 -51.93 -0.28 1.47 16 28 H 0.13 2.18 5.91 -52.48 -0.31 1.87 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 272.95 15.07 4.11 4.11 Total: -1.00 -28.99 272.95 -7.66 -36.65 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.63 Total: 8.93 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.20 Total: -11.38 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.45 Total: -39.92 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.10 Total: -14.24 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.08 Total: 18.49 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.41 Total: -2.66 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.99 -7.66 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263193.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.695 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds