Wall clock time and date at job start Mon Mar 30 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47285 * 89.99650 * 3 2 1 5 5 H 1.48502 * 109.47247 * 209.99610 * 3 2 1 6 6 H 1.48494 * 109.47210 * 329.99821 * 3 2 1 7 7 C 1.37880 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99352 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00217 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.21536 * 52.66742 * 9 7 2 11 11 N 1.46762 * 110.24633 * 290.64076 * 9 7 2 12 12 C 1.34425 * 111.29693 * 258.01477 * 11 9 7 13 13 O 1.21284 * 124.93580 * 179.55965 * 12 11 9 14 14 C 1.51281 * 110.11782 * 359.59510 * 12 11 9 15 15 C 1.54482 * 110.24545 * 174.58902 * 9 7 2 16 16 H 1.08996 * 110.97300 * 211.70496 * 15 9 7 17 17 C 1.50705 * 110.97031 * 335.43524 * 15 9 7 18 18 C 1.38231 * 120.00982 * 82.00092 * 17 15 9 19 19 C 1.38214 * 120.01458 * 179.77160 * 18 17 15 20 20 C 1.38260 * 120.02561 * 0.50521 * 19 18 17 21 21 C 1.38194 * 120.01535 * 359.75136 * 20 19 18 22 22 C 1.38335 * 120.00253 * 262.27977 * 17 15 9 23 23 Cl 1.73602 * 120.01136 * 359.95459 * 22 17 15 24 24 H 0.97002 * 119.99708 * 179.97438 * 1 2 3 25 25 H 0.96992 * 124.35150 * 78.01986 * 11 9 7 26 26 H 1.08994 * 110.48150 * 225.06958 * 14 12 11 27 27 H 1.08991 * 110.48679 * 102.42399 * 14 12 11 28 28 H 1.08003 * 119.99226 * 0.02562 * 18 17 15 29 29 H 1.08001 * 119.99465 * 180.23432 * 19 18 17 30 30 H 1.08002 * 119.99986 * 179.76857 * 20 19 18 31 31 H 1.08002 * 120.01248 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5259 -2.5154 -0.8130 11 7 0.5763 -2.6960 1.2889 12 6 1.2501 -3.5619 2.0656 13 8 0.9173 -3.8969 3.1828 14 6 2.4842 -4.0568 1.3440 15 6 2.2335 -3.6836 -0.1355 16 1 1.7736 -4.5120 -0.6742 17 6 3.5112 -3.2502 -0.8070 18 6 4.5038 -2.6313 -0.0705 19 6 5.6776 -2.2380 -0.6853 20 6 5.8554 -2.4539 -2.0393 21 6 4.8616 -3.0678 -2.7778 22 6 3.6884 -3.4664 -2.1618 23 17 2.4397 -4.2382 -3.0886 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.2497 -2.2578 1.5467 26 1 2.5827 -5.1367 1.4536 27 1 3.3739 -3.5515 1.7194 28 1 4.3638 -2.4587 0.9864 29 1 6.4544 -1.7579 -0.1087 30 1 6.7712 -2.1431 -2.5200 31 1 5.0007 -3.2368 -3.8354 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263193.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:57 Heat of formation + Delta-G solvation = -38.443672 kcal Electronic energy + Delta-G solvation = -18108.997884 eV Core-core repulsion = 15186.981616 eV Total energy + Delta-G solvation = -2922.016268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62339 -39.88500 -37.59630 -37.26020 -34.61998 -33.55408 -31.56566 -30.16451 -28.77514 -26.16241 -23.81053 -23.44370 -21.38095 -21.24020 -19.39524 -18.18008 -17.78839 -16.73108 -16.19185 -15.98795 -15.79031 -15.60602 -15.25332 -14.71826 -14.56677 -14.14910 -14.06163 -13.55145 -13.51637 -12.72173 -12.60272 -12.45105 -12.27100 -11.98669 -11.79685 -11.77679 -11.57284 -11.26757 -10.89979 -10.57916 -9.81180 -9.46197 -9.32051 -8.56111 -6.36255 0.37894 0.48809 1.31884 1.54945 1.59498 1.71337 1.76616 2.55228 2.63626 2.86594 3.27772 3.53845 3.67355 3.98101 4.06910 4.22084 4.31846 4.35747 4.53558 4.61833 4.76588 4.90874 4.91975 5.06350 5.14972 5.43703 5.57771 5.65052 5.94387 6.03419 6.04399 6.19333 6.39666 6.62374 7.39814 7.45873 8.77840 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.010428 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.751961 B = 2684.336522 C = 3465.644036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 1.102 2.898 4 H -0.283 1.283 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.243 3.757 10 H 0.023 0.977 11 N -0.712 5.712 12 C 0.505 3.495 13 O -0.610 6.610 14 C -0.135 4.135 15 C -0.050 4.050 16 H 0.090 0.910 17 C -0.038 4.038 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.047 4.047 23 Cl -0.083 7.083 24 H 0.259 0.741 25 H 0.390 0.610 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.645 -5.588 -6.352 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.217 4.217 3 Si 0.926 3.074 4 H -0.209 1.209 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.642 4.642 8 H 0.106 0.894 9 C 0.142 3.858 10 H 0.041 0.959 11 N -0.362 5.362 12 C 0.293 3.707 13 O -0.495 6.495 14 C -0.174 4.174 15 C -0.069 4.069 16 H 0.109 0.891 17 C -0.039 4.039 18 C -0.122 4.122 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.074 4.074 23 Cl -0.054 7.054 24 H 0.069 0.931 25 H 0.227 0.773 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.279 -4.256 -5.973 14.302 hybrid contribution -1.205 -1.308 0.130 1.783 sum 11.074 -5.564 -5.844 13.702 Atomic orbital electron populations 1.70929 1.08084 1.30110 1.47900 1.26979 0.96415 1.06094 0.92242 0.83107 0.74965 0.72164 0.77202 1.20896 1.18569 1.21816 1.22954 0.96337 0.91116 1.53769 0.89360 1.19343 0.90607 0.94477 0.81409 0.95938 1.47383 1.25998 1.43016 1.19757 1.21359 0.86154 0.78560 0.84618 1.90609 1.74012 1.63936 1.20954 1.22445 0.96900 1.03786 0.94269 1.21000 0.93821 0.97555 0.94516 0.89136 1.19175 0.94691 0.98013 0.92035 1.21089 0.93155 0.97273 1.00647 1.21507 0.97300 0.99277 0.95700 1.21388 0.99574 0.98292 0.93859 1.21228 0.91883 0.99333 1.01213 1.20902 0.91755 1.03111 0.91606 1.98326 1.54025 1.79924 1.73158 0.93086 0.77337 0.86814 0.86568 0.85309 0.83154 0.82216 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.32 13.62 21.45 0.29 -52.03 16 2 C -0.02 -0.85 5.45 84.66 0.46 -0.39 16 3 Si 1.10 46.83 29.90 68.60 2.05 48.88 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.60 -28.94 8.02 25.60 0.21 -28.73 16 8 H 0.09 3.98 4.09 -2.91 -0.01 3.97 16 9 C 0.24 10.80 2.76 44.70 0.12 10.93 16 10 H 0.02 1.12 7.73 -2.39 -0.02 1.10 16 11 N -0.71 -32.39 5.61 -442.97 -2.48 -34.87 16 12 C 0.51 22.18 8.43 87.90 0.74 22.92 16 13 O -0.61 -30.39 18.03 -3.04 -0.05 -30.45 16 14 C -0.13 -4.67 6.28 30.59 0.19 -4.48 16 15 C -0.05 -1.80 2.94 -10.48 -0.03 -1.83 16 16 H 0.09 3.12 6.84 -2.39 -0.02 3.11 16 17 C -0.04 -1.26 4.07 -19.84 -0.08 -1.34 16 18 C -0.10 -3.13 6.42 22.26 0.14 -2.99 16 19 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 20 C -0.11 -2.49 10.05 22.26 0.22 -2.27 16 21 C -0.12 -2.98 9.83 22.29 0.22 -2.76 16 22 C -0.05 -1.46 6.31 22.33 0.14 -1.32 16 23 Cl -0.08 -2.52 27.27 -2.72 -0.07 -2.60 16 24 H 0.26 14.44 6.17 -92.71 -0.57 13.87 16 25 H 0.39 18.52 8.16 -92.71 -0.76 17.76 16 26 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 27 H 0.12 3.75 5.38 -2.39 -0.01 3.74 16 28 H 0.13 3.92 5.91 -2.91 -0.02 3.90 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -62.53 272.95 2.92 -59.61 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.63 Total: 26.41 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 2.56 Total: -14.96 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.19 Total: -86.90 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.05 Total: 48.88 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.07 Total: -2.60 kcal Total: -62.53 2.92 -59.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263193.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.168 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds