Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48502 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47015 * 299.99845 * 3 2 1 6 6 H 1.48500 * 109.46788 * 59.99535 * 3 2 1 7 7 C 1.37889 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99637 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.28563 * 301.97381 * 9 7 2 11 11 N 1.46755 * 110.24641 * 63.95121 * 9 7 2 12 12 C 1.34419 * 111.30044 * 136.01487 * 11 9 7 13 13 O 1.21288 * 124.94356 * 179.62532 * 12 11 9 14 14 C 1.51283 * 110.11769 * 359.59067 * 12 11 9 15 15 C 1.54486 * 110.24198 * 180.02562 * 9 7 2 16 16 H 1.08997 * 110.99807 * 333.71193 * 15 9 7 17 17 C 1.50693 * 110.97066 * 97.46453 * 15 9 7 18 18 C 1.38237 * 120.00782 * 53.82777 * 17 15 9 19 19 C 1.38224 * 120.01313 * 179.74160 * 18 17 15 20 20 C 1.38263 * 120.02464 * 0.23958 * 19 18 17 21 21 C 1.38190 * 120.01675 * 0.03832 * 20 19 18 22 22 C 1.38328 * 120.00847 * 234.10509 * 17 15 9 23 23 Cl 1.73603 * 120.01182 * 0.02562 * 22 17 15 24 24 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.96996 * 124.35409 * 316.03461 * 11 9 7 26 26 H 1.08993 * 110.49076 * 225.07209 * 14 12 11 27 27 H 1.09002 * 110.48530 * 102.42516 * 14 12 11 28 28 H 1.08002 * 119.99593 * 0.02778 * 18 17 15 29 29 H 1.07996 * 119.98814 * 180.25946 * 19 18 17 30 30 H 1.08004 * 119.98845 * 180.02562 * 20 19 18 31 31 H 1.08001 * 120.00864 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5927 -2.5556 0.8676 11 7 0.4738 -2.6369 -1.2367 12 6 0.5878 -3.8741 -1.7498 13 8 0.0436 -4.2588 -2.7632 14 6 1.4942 -4.7168 -0.8797 15 6 2.2388 -3.6869 0.0018 16 1 3.1903 -3.4040 -0.4482 17 6 2.4421 -4.2178 1.3974 18 6 1.3515 -4.5878 2.1620 19 6 1.5381 -5.0799 3.4402 20 6 2.8153 -5.1975 3.9565 21 6 3.9060 -4.8226 3.1953 22 6 3.7197 -4.3296 1.9158 23 17 5.0893 -3.8577 0.9592 24 1 -0.4851 0.8401 -0.0004 25 1 -0.0540 -1.9264 -1.6336 26 1 2.2008 -5.2753 -1.4935 27 1 0.9065 -5.3944 -0.2604 28 1 0.3536 -4.4969 1.7589 29 1 0.6860 -5.3727 4.0356 30 1 2.9605 -5.5824 4.9552 31 1 4.9035 -4.9142 3.5989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = -30.891996 kcal Electronic energy + Delta-G solvation = -17740.745769 eV Core-core repulsion = 14819.056966 eV Total energy + Delta-G solvation = -2921.688803 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89112 -38.47941 -36.13225 -35.67825 -32.81006 -31.82045 -30.50035 -28.80998 -27.60602 -24.21789 -22.77167 -21.97082 -19.75783 -19.42078 -17.16578 -16.97997 -15.75306 -15.54633 -14.89222 -14.62165 -14.56712 -13.76713 -13.53526 -13.41658 -12.87024 -12.55972 -12.30837 -12.25102 -11.94757 -11.38313 -11.25576 -11.22608 -11.06682 -10.73806 -10.63458 -10.21260 -9.98104 -9.70123 -9.07666 -8.73870 -8.61360 -8.27759 -7.69965 -6.31922 -4.41598 1.39621 1.49178 2.44814 3.16606 3.26495 3.30693 3.55475 3.85216 4.23369 4.60357 4.87695 4.99225 5.09530 5.19782 5.42061 5.47404 5.51784 5.64211 5.76671 5.91579 6.04692 6.17369 6.32298 6.43070 6.46520 6.61545 6.78132 7.02609 7.26643 7.65252 7.80958 8.08257 8.35851 8.72601 9.29111 9.41377 10.75329 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.008610 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.502369 B = 3251.405694 C = 3996.231011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.263 3.737 10 H 0.049 0.951 11 N -0.688 5.688 12 C 0.500 3.500 13 O -0.582 6.582 14 C -0.147 4.147 15 C -0.072 4.072 16 H 0.102 0.898 17 C -0.034 4.034 18 C -0.101 4.101 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.029 4.029 23 Cl -0.070 7.070 24 H 0.267 0.733 25 H 0.412 0.588 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -8.346 7.749 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.161 3.839 10 H 0.067 0.933 11 N -0.340 5.340 12 C 0.285 3.715 13 O -0.465 6.465 14 C -0.187 4.187 15 C -0.091 4.091 16 H 0.120 0.880 17 C -0.035 4.035 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.055 4.055 23 Cl -0.041 7.041 24 H 0.077 0.923 25 H 0.251 0.749 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.574 -8.436 7.234 12.432 hybrid contribution 0.344 1.412 -0.080 1.456 sum 5.917 -7.024 7.154 11.642 Atomic orbital electron populations 1.69881 1.06014 1.27561 1.48935 1.25087 0.94953 0.99721 0.93493 0.86436 0.80361 0.82959 0.77785 1.19376 1.20781 1.20737 1.21364 0.93584 0.89631 1.52005 0.91219 1.19444 0.88188 0.92047 0.84213 0.93315 1.47108 1.48111 1.11623 1.27126 1.20834 0.81783 0.84209 0.84722 1.90629 1.52752 1.76705 1.26452 1.22418 0.99157 0.98262 0.98840 1.21462 1.01755 0.95656 0.90189 0.88036 1.19589 0.91034 0.96403 0.96509 1.21046 0.98723 0.98128 0.94046 1.21174 0.97174 0.99349 0.95601 1.20983 0.92231 1.01151 0.99655 1.20946 0.99736 0.99964 0.92573 1.20795 0.88231 1.03269 0.93241 1.98348 1.42989 1.90794 1.71973 0.92301 0.74862 0.89311 0.88968 0.85071 0.85770 0.85691 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 12.38 55.43 0.69 -22.53 16 2 C 0.07 1.83 5.40 -17.82 -0.10 1.74 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.13 8.73 -34.44 -0.30 -13.43 16 8 H 0.07 1.74 7.60 -52.49 -0.40 1.34 16 9 C 0.26 5.91 2.77 -68.16 -0.19 5.72 16 10 H 0.05 1.16 6.72 -51.93 -0.35 0.81 16 11 N -0.69 -15.93 5.69 -53.88 -0.31 -16.24 16 12 C 0.50 11.09 8.43 -10.86 -0.09 11.00 16 13 O -0.58 -14.60 18.03 5.55 0.10 -14.50 16 14 C -0.15 -2.65 6.34 -26.72 -0.17 -2.82 16 15 C -0.07 -1.35 2.73 -90.12 -0.25 -1.60 16 16 H 0.10 1.99 5.92 -51.93 -0.31 1.68 16 17 C -0.03 -0.57 4.97 -104.59 -0.52 -1.09 16 18 C -0.10 -1.54 8.03 -39.59 -0.32 -1.86 16 19 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 21 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 22 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 23 Cl -0.07 -1.08 27.05 -51.86 -1.40 -2.48 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.41 10.13 8.13 -40.82 -0.33 9.80 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.49 7.08 -51.93 -0.37 1.12 16 28 H 0.13 1.97 7.35 -52.49 -0.39 1.59 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -28.21 281.07 -8.04 -36.25 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -2.97 Total: 8.81 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.36 Total: -8.60 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.38 Total: -38.76 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.40 Total: -2.48 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.21 -8.04 -36.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.355 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds