Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48502 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47015 * 299.99845 * 3 2 1 6 6 H 1.48500 * 109.46788 * 59.99535 * 3 2 1 7 7 C 1.37889 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99637 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.28563 * 301.97381 * 9 7 2 11 11 N 1.46755 * 110.24641 * 63.95121 * 9 7 2 12 12 C 1.34419 * 111.30044 * 136.01487 * 11 9 7 13 13 O 1.21288 * 124.94356 * 179.62532 * 12 11 9 14 14 C 1.51283 * 110.11769 * 359.59067 * 12 11 9 15 15 C 1.54486 * 110.24198 * 180.02562 * 9 7 2 16 16 H 1.08997 * 110.99807 * 333.71193 * 15 9 7 17 17 C 1.50693 * 110.97066 * 97.46453 * 15 9 7 18 18 C 1.38237 * 120.00782 * 53.82777 * 17 15 9 19 19 C 1.38224 * 120.01313 * 179.74160 * 18 17 15 20 20 C 1.38263 * 120.02464 * 0.23958 * 19 18 17 21 21 C 1.38190 * 120.01675 * 0.03832 * 20 19 18 22 22 C 1.38328 * 120.00847 * 234.10509 * 17 15 9 23 23 Cl 1.73603 * 120.01182 * 0.02562 * 22 17 15 24 24 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.96996 * 124.35409 * 316.03461 * 11 9 7 26 26 H 1.08993 * 110.49076 * 225.07209 * 14 12 11 27 27 H 1.09002 * 110.48530 * 102.42516 * 14 12 11 28 28 H 1.08002 * 119.99593 * 0.02778 * 18 17 15 29 29 H 1.07996 * 119.98814 * 180.25946 * 19 18 17 30 30 H 1.08004 * 119.98845 * 180.02562 * 20 19 18 31 31 H 1.08001 * 120.00864 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5927 -2.5556 0.8676 11 7 0.4738 -2.6369 -1.2367 12 6 0.5878 -3.8741 -1.7498 13 8 0.0436 -4.2588 -2.7632 14 6 1.4942 -4.7168 -0.8797 15 6 2.2388 -3.6869 0.0018 16 1 3.1903 -3.4040 -0.4482 17 6 2.4421 -4.2178 1.3974 18 6 1.3515 -4.5878 2.1620 19 6 1.5381 -5.0799 3.4402 20 6 2.8153 -5.1975 3.9565 21 6 3.9060 -4.8226 3.1953 22 6 3.7197 -4.3296 1.9158 23 17 5.0893 -3.8577 0.9592 24 1 -0.4851 0.8401 -0.0004 25 1 -0.0540 -1.9264 -1.6336 26 1 2.2008 -5.2753 -1.4935 27 1 0.9065 -5.3944 -0.2604 28 1 0.3536 -4.4969 1.7589 29 1 0.6860 -5.3727 4.0356 30 1 2.9605 -5.5824 4.9552 31 1 4.9035 -4.9142 3.5989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = -47.571339 kcal Electronic energy + Delta-G solvation = -17741.469039 eV Core-core repulsion = 14819.056966 eV Total energy + Delta-G solvation = -2922.412074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38992 -39.85420 -37.44269 -37.25992 -34.61823 -33.36249 -31.55165 -30.20958 -29.39924 -25.84574 -24.06168 -23.20945 -21.17871 -21.14630 -18.98623 -18.27956 -17.36677 -16.99325 -16.48459 -16.10535 -15.90013 -15.43558 -14.75768 -14.63451 -14.47489 -14.17522 -13.88011 -13.78545 -13.49280 -12.87849 -12.57845 -12.48337 -12.44332 -12.34647 -12.07314 -11.86999 -11.45309 -11.31745 -10.92081 -10.63052 -9.71648 -9.58356 -9.43486 -8.26142 -6.40998 0.32215 0.41987 1.31354 1.37548 1.42898 1.52547 1.78504 2.36879 2.71740 2.82412 3.24225 3.61618 3.81600 3.98130 4.04164 4.24732 4.35731 4.40135 4.54387 4.64486 4.81731 4.88503 4.94491 5.13573 5.39189 5.42333 5.56717 5.63971 5.69598 5.94233 6.00050 6.23821 6.47873 6.82440 7.32338 7.54959 8.80323 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.008610 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.502369 B = 3251.405694 C = 3996.231011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.263 3.737 10 H 0.033 0.967 11 N -0.696 5.696 12 C 0.494 3.506 13 O -0.614 6.614 14 C -0.133 4.133 15 C -0.058 4.058 16 H 0.092 0.908 17 C -0.060 4.060 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.044 4.044 23 Cl -0.078 7.078 24 H 0.268 0.732 25 H 0.400 0.600 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 -9.384 9.747 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.161 3.839 10 H 0.051 0.949 11 N -0.345 5.345 12 C 0.281 3.719 13 O -0.500 6.500 14 C -0.173 4.173 15 C -0.077 4.077 16 H 0.110 0.890 17 C -0.061 4.061 18 C -0.134 4.134 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.071 4.071 23 Cl -0.049 7.049 24 H 0.077 0.923 25 H 0.237 0.763 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.628 -9.484 9.249 14.813 hybrid contribution 0.003 1.709 -0.635 1.824 sum 6.630 -7.775 8.614 13.364 Atomic orbital electron populations 1.69965 1.06999 1.28090 1.49873 1.25726 0.95613 1.02384 0.93438 0.85595 0.79313 0.79755 0.77593 1.19138 1.20931 1.20378 1.21607 0.93519 0.90896 1.51549 0.91757 1.19380 0.88415 0.92947 0.83163 0.94946 1.47192 1.48081 1.11829 1.27373 1.21475 0.81667 0.84244 0.84523 1.90600 1.54171 1.77234 1.27973 1.22399 0.98717 0.97809 0.98370 1.21229 1.00070 0.94224 0.92178 0.88988 1.19455 0.92296 0.98645 0.95683 1.21126 0.97962 0.99022 0.95331 1.21532 0.98827 0.97944 0.94584 1.21457 0.91225 0.99154 1.00886 1.21302 1.01503 0.98879 0.91500 1.20982 0.87551 1.04253 0.94294 1.98340 1.43202 1.90985 1.72414 0.92327 0.76285 0.87395 0.86690 0.85805 0.82895 0.81822 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.47 12.38 21.45 0.27 -48.20 16 2 C 0.03 1.55 5.40 84.66 0.46 2.01 16 3 Si 0.95 41.34 29.54 68.60 2.03 43.36 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -27.07 8.73 25.60 0.22 -26.84 16 8 H 0.06 3.24 7.60 -2.91 -0.02 3.22 16 9 C 0.26 11.98 2.77 44.70 0.12 12.11 16 10 H 0.03 1.59 6.72 -2.39 -0.02 1.58 16 11 N -0.70 -32.98 5.69 -442.97 -2.52 -35.50 16 12 C 0.49 22.14 8.43 87.90 0.74 22.89 16 13 O -0.61 -31.18 18.03 -3.06 -0.06 -31.23 16 14 C -0.13 -4.71 6.34 30.60 0.19 -4.52 16 15 C -0.06 -2.17 2.73 -10.47 -0.03 -2.20 16 16 H 0.09 3.60 5.92 -2.39 -0.01 3.58 16 17 C -0.06 -1.94 4.97 -19.85 -0.10 -2.04 16 18 C -0.12 -3.35 8.03 22.27 0.18 -3.17 16 19 C -0.11 -2.43 10.05 22.27 0.22 -2.21 16 20 C -0.11 -2.11 10.05 22.26 0.22 -1.89 16 21 C -0.11 -2.59 9.83 22.29 0.22 -2.37 16 22 C -0.04 -1.30 6.31 22.32 0.14 -1.16 16 23 Cl -0.08 -2.34 27.05 -2.72 -0.07 -2.41 16 24 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 25 H 0.40 20.39 8.13 -92.71 -0.75 19.63 16 26 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.12 3.55 7.08 -2.39 -0.02 3.53 16 28 H 0.12 3.66 7.35 -2.91 -0.02 3.63 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -61.04 281.07 2.66 -58.39 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.42 Total: 24.98 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 2.60 Total: -9.39 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -2.26 Total: -83.70 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.06 Total: -31.23 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.41 kcal Total: -61.04 2.66 -58.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.817 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds