Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47040 * 239.99875 * 3 2 1 5 5 H 1.48497 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46996 * 120.00004 * 3 2 1 7 7 C 1.37876 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00008 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.28943 * 60.51608 * 9 7 2 11 11 N 1.46766 * 110.23802 * 298.53924 * 9 7 2 12 12 C 1.34426 * 111.29916 * 223.71562 * 11 9 7 13 13 O 1.21277 * 124.94294 * 180.65470 * 12 11 9 14 14 C 1.51285 * 110.11504 * 0.67929 * 12 11 9 15 15 C 1.54628 * 104.19604 * 16.24956 * 14 12 11 16 16 H 1.09002 * 110.97177 * 93.31808 * 15 14 12 17 17 C 1.50694 * 110.97230 * 217.04711 * 15 14 12 18 18 C 1.38238 * 120.00638 * 58.26872 * 17 15 14 19 19 C 1.38225 * 120.01107 * 179.77204 * 18 17 15 20 20 C 1.38259 * 120.02806 * 0.50865 * 19 18 17 21 21 C 1.38193 * 120.01376 * 359.74243 * 20 19 18 22 22 C 1.38336 * 120.01002 * 238.54820 * 17 15 14 23 23 Cl 1.73604 * 120.00897 * 359.95314 * 22 17 15 24 24 H 0.96996 * 119.99868 * 0.02562 * 1 2 3 25 25 H 0.97001 * 124.35394 * 43.99248 * 11 9 7 26 26 H 1.08992 * 110.48514 * 134.92606 * 14 12 11 27 27 H 1.09001 * 110.48559 * 257.57305 * 14 12 11 28 28 H 1.07997 * 119.99206 * 0.02562 * 18 17 15 29 29 H 1.08006 * 119.98376 * 180.22910 * 19 18 17 30 30 H 1.08001 * 119.99322 * 179.76923 * 20 19 18 31 31 H 1.07998 * 120.01129 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6266 -2.5751 -0.8896 11 7 0.4270 -2.6097 1.2100 12 6 0.5161 -3.8369 1.7512 13 8 -0.0714 -4.2010 2.7477 14 6 1.4565 -4.6977 0.9366 15 6 2.2401 -3.6863 0.0682 16 1 3.1720 -3.3956 0.5531 17 6 2.5021 -4.2451 -1.3065 18 6 1.4449 -4.6344 -2.1076 19 6 1.6849 -5.1426 -3.3705 20 6 2.9828 -5.2718 -3.8291 21 6 4.0408 -4.8878 -3.0272 22 6 3.8009 -4.3741 -1.7650 23 17 5.1294 -3.8911 -0.7571 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1157 -1.8908 1.5701 26 1 2.1352 -5.2453 1.5904 27 1 0.8938 -5.3863 0.3062 28 1 0.4311 -4.5376 -1.7483 29 1 0.8584 -5.4432 -3.9974 30 1 3.1699 -5.6724 -4.8145 31 1 5.0545 -4.9883 -3.3857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -30.523749 kcal Electronic energy + Delta-G solvation = -17741.660691 eV Core-core repulsion = 14819.987856 eV Total energy + Delta-G solvation = -2921.672835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88885 -38.47704 -36.13686 -35.67305 -32.81817 -31.80356 -30.50341 -28.80106 -27.60437 -24.21539 -22.77346 -21.96832 -19.75879 -19.40706 -17.15794 -16.98496 -15.74454 -15.54606 -14.89010 -14.61851 -14.56884 -13.76589 -13.53801 -13.41805 -12.86299 -12.54723 -12.30233 -12.25132 -11.95141 -11.38699 -11.25846 -11.22998 -11.02310 -10.77241 -10.63749 -10.23275 -9.99129 -9.71690 -9.06462 -8.72771 -8.61518 -8.27854 -7.69302 -6.31680 -4.41204 1.39314 1.48912 2.44355 3.19849 3.25466 3.28343 3.56276 3.84970 4.23475 4.61410 4.87698 4.99068 5.09800 5.19826 5.42022 5.47676 5.51368 5.63910 5.76404 5.91394 6.04691 6.17192 6.32460 6.42538 6.46028 6.61262 6.78068 7.02334 7.26243 7.65403 7.81158 8.09106 8.36662 8.72461 9.29279 9.43077 10.75770 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.008566 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.435578 B = 3267.873351 C = 4007.216354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.264 3.736 10 H 0.048 0.952 11 N -0.687 5.687 12 C 0.499 3.501 13 O -0.582 6.582 14 C -0.147 4.147 15 C -0.072 4.072 16 H 0.102 0.898 17 C -0.034 4.034 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.029 4.029 23 Cl -0.070 7.070 24 H 0.269 0.731 25 H 0.413 0.587 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -8.481 -7.468 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.162 3.838 10 H 0.065 0.935 11 N -0.339 5.339 12 C 0.284 3.716 13 O -0.465 6.465 14 C -0.187 4.187 15 C -0.091 4.091 16 H 0.120 0.880 17 C -0.035 4.035 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.056 4.056 23 Cl -0.041 7.041 24 H 0.078 0.922 25 H 0.253 0.747 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.846 -8.555 -6.949 12.476 hybrid contribution 0.369 1.402 0.066 1.452 sum 6.215 -7.152 -6.883 11.712 Atomic orbital electron populations 1.69838 1.06013 1.27799 1.48931 1.25076 0.94960 0.99693 0.93465 0.86536 0.79646 0.82252 0.79009 1.19857 1.21117 1.19932 1.21289 0.93532 0.89680 1.52250 0.91294 1.19466 0.87392 0.92121 0.84794 0.93458 1.47075 1.46227 1.12081 1.28521 1.20830 0.82289 0.84238 0.84213 1.90625 1.51478 1.77309 1.27129 1.22415 0.98756 0.98261 0.99265 1.21499 1.01343 0.95642 0.90587 0.88008 1.19600 0.90979 0.96298 0.96651 1.21047 0.99021 0.98075 0.93850 1.21175 0.96881 0.99312 0.95898 1.20981 0.92346 1.01145 0.99570 1.20946 0.99889 0.99851 0.92505 1.20797 0.88558 1.03137 0.93095 1.98347 1.46258 1.90523 1.68993 0.92162 0.74661 0.89319 0.88971 0.85070 0.85765 0.85687 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.27 12.17 55.43 0.67 -22.59 16 2 C 0.07 1.85 5.38 -17.82 -0.10 1.75 16 3 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -13.18 8.74 -34.44 -0.30 -13.48 16 8 H 0.07 1.71 7.63 -52.49 -0.40 1.31 16 9 C 0.26 5.94 2.81 -68.06 -0.19 5.75 16 10 H 0.05 1.13 6.73 -51.93 -0.35 0.78 16 11 N -0.69 -15.99 5.67 -53.78 -0.31 -16.29 16 12 C 0.50 11.13 8.43 -10.86 -0.09 11.04 16 13 O -0.58 -14.65 18.03 5.56 0.10 -14.55 16 14 C -0.15 -2.66 6.33 -26.74 -0.17 -2.82 16 15 C -0.07 -1.36 2.73 -90.04 -0.25 -1.60 16 16 H 0.10 1.99 5.96 -51.93 -0.31 1.68 16 17 C -0.03 -0.57 4.97 -104.59 -0.52 -1.09 16 18 C -0.10 -1.54 8.03 -39.59 -0.32 -1.86 16 19 C -0.11 -1.45 10.05 -39.58 -0.40 -1.84 16 20 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 21 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 22 C -0.03 -0.46 6.31 -39.50 -0.25 -0.71 16 23 Cl -0.07 -1.08 27.05 -51.86 -1.40 -2.48 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.41 10.24 7.90 -40.82 -0.32 9.92 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.49 7.06 -51.93 -0.37 1.12 16 28 H 0.13 1.97 7.33 -52.49 -0.38 1.58 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -28.18 280.67 -8.05 -36.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.96 Total: 8.97 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.37 Total: -8.57 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.37 Total: -38.89 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.10 Total: -14.55 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.40 Total: -2.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.18 -8.05 -36.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds