Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47040 * 239.99875 * 3 2 1 5 5 H 1.48497 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46996 * 120.00004 * 3 2 1 7 7 C 1.37876 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00008 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.28943 * 60.51608 * 9 7 2 11 11 N 1.46766 * 110.23802 * 298.53924 * 9 7 2 12 12 C 1.34426 * 111.29916 * 223.71562 * 11 9 7 13 13 O 1.21277 * 124.94294 * 180.65470 * 12 11 9 14 14 C 1.51285 * 110.11504 * 0.67929 * 12 11 9 15 15 C 1.54628 * 104.19604 * 16.24956 * 14 12 11 16 16 H 1.09002 * 110.97177 * 93.31808 * 15 14 12 17 17 C 1.50694 * 110.97230 * 217.04711 * 15 14 12 18 18 C 1.38238 * 120.00638 * 58.26872 * 17 15 14 19 19 C 1.38225 * 120.01107 * 179.77204 * 18 17 15 20 20 C 1.38259 * 120.02806 * 0.50865 * 19 18 17 21 21 C 1.38193 * 120.01376 * 359.74243 * 20 19 18 22 22 C 1.38336 * 120.01002 * 238.54820 * 17 15 14 23 23 Cl 1.73604 * 120.00897 * 359.95314 * 22 17 15 24 24 H 0.96996 * 119.99868 * 0.02562 * 1 2 3 25 25 H 0.97001 * 124.35394 * 43.99248 * 11 9 7 26 26 H 1.08992 * 110.48514 * 134.92606 * 14 12 11 27 27 H 1.09001 * 110.48559 * 257.57305 * 14 12 11 28 28 H 1.07997 * 119.99206 * 0.02562 * 18 17 15 29 29 H 1.08006 * 119.98376 * 180.22910 * 19 18 17 30 30 H 1.08001 * 119.99322 * 179.76923 * 20 19 18 31 31 H 1.07998 * 120.01129 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6266 -2.5751 -0.8896 11 7 0.4270 -2.6097 1.2100 12 6 0.5161 -3.8369 1.7512 13 8 -0.0714 -4.2010 2.7477 14 6 1.4565 -4.6977 0.9366 15 6 2.2401 -3.6863 0.0682 16 1 3.1720 -3.3956 0.5531 17 6 2.5021 -4.2451 -1.3065 18 6 1.4449 -4.6344 -2.1076 19 6 1.6849 -5.1426 -3.3705 20 6 2.9828 -5.2718 -3.8291 21 6 4.0408 -4.8878 -3.0272 22 6 3.8009 -4.3741 -1.7650 23 17 5.1294 -3.8911 -0.7571 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1157 -1.8908 1.5701 26 1 2.1352 -5.2453 1.5904 27 1 0.8938 -5.3863 0.3062 28 1 0.4311 -4.5376 -1.7483 29 1 0.8584 -5.4432 -3.9974 30 1 3.1699 -5.6724 -4.8145 31 1 5.0545 -4.9883 -3.3857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -47.146163 kcal Electronic energy + Delta-G solvation = -17742.381493 eV Core-core repulsion = 14819.987856 eV Total energy + Delta-G solvation = -2922.393637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38753 -39.85375 -37.44151 -37.26065 -34.62140 -33.35077 -31.55223 -30.20265 -29.39880 -25.84154 -24.06238 -23.20677 -21.17654 -21.14022 -18.98201 -18.27597 -17.35951 -16.99636 -16.48096 -16.10429 -15.89970 -15.43778 -14.75439 -14.63363 -14.46189 -14.17314 -13.88202 -13.78291 -13.49964 -12.83145 -12.58595 -12.50404 -12.44171 -12.34787 -12.10386 -11.87493 -11.46684 -11.32029 -10.90880 -10.61912 -9.71680 -9.58114 -9.43498 -8.25910 -6.40667 0.32162 0.41902 1.31202 1.40888 1.42915 1.49605 1.78836 2.37066 2.72023 2.82748 3.24801 3.61472 3.81607 3.98161 4.04008 4.24634 4.35835 4.39457 4.54307 4.64335 4.81546 4.88690 4.94078 5.13394 5.39061 5.42303 5.56645 5.63860 5.69433 5.94277 6.00017 6.24264 6.47879 6.82618 7.32443 7.55859 8.80368 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.008566 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.435578 B = 3267.873351 C = 4007.216354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.263 3.737 10 H 0.032 0.968 11 N -0.695 5.695 12 C 0.493 3.507 13 O -0.615 6.615 14 C -0.133 4.133 15 C -0.058 4.058 16 H 0.092 0.908 17 C -0.060 4.060 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.045 4.045 23 Cl -0.078 7.078 24 H 0.268 0.732 25 H 0.401 0.599 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -9.552 -9.430 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.162 3.838 10 H 0.050 0.950 11 N -0.344 5.344 12 C 0.280 3.720 13 O -0.500 6.500 14 C -0.173 4.173 15 C -0.077 4.077 16 H 0.110 0.890 17 C -0.061 4.061 18 C -0.135 4.135 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.071 4.071 23 Cl -0.049 7.049 24 H 0.077 0.923 25 H 0.239 0.761 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.006 -9.636 -8.929 14.888 hybrid contribution 0.000 1.706 0.609 1.812 sum 7.006 -7.929 -8.320 13.460 Atomic orbital electron populations 1.69929 1.07002 1.28241 1.49876 1.25723 0.95623 1.02384 0.93407 0.85695 0.78530 0.79092 0.78917 1.19309 1.21003 1.20019 1.21557 0.93551 0.90934 1.51775 0.91694 1.19411 0.87654 0.93026 0.83745 0.95031 1.47168 1.46204 1.12260 1.28812 1.21480 0.82260 0.84319 0.83903 1.90596 1.52924 1.77853 1.28636 1.22396 0.98108 0.97770 0.99032 1.21261 0.99715 0.94217 0.92492 0.88955 1.19464 0.92213 0.98497 0.95915 1.21128 0.98309 0.98943 0.95081 1.21534 0.98469 0.97922 0.94939 1.21456 0.91393 0.99191 1.00704 1.21302 1.01647 0.98779 0.91443 1.20983 0.87893 1.04108 0.94131 1.98340 1.46426 1.90714 1.69452 0.92291 0.76120 0.87413 0.86676 0.85783 0.82883 0.81827 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.59 12.17 21.45 0.26 -48.33 16 2 C 0.03 1.56 5.38 84.65 0.46 2.02 16 3 Si 0.95 41.33 29.54 68.60 2.03 43.35 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -27.21 8.74 25.60 0.22 -26.99 16 8 H 0.06 3.26 7.63 -2.91 -0.02 3.24 16 9 C 0.26 12.03 2.81 44.76 0.13 12.16 16 10 H 0.03 1.55 6.73 -2.39 -0.02 1.53 16 11 N -0.70 -33.13 5.67 -442.65 -2.51 -35.64 16 12 C 0.49 22.22 8.43 87.90 0.74 22.96 16 13 O -0.61 -31.32 18.03 -3.02 -0.05 -31.38 16 14 C -0.13 -4.73 6.33 30.59 0.19 -4.53 16 15 C -0.06 -2.17 2.73 -10.42 -0.03 -2.20 16 16 H 0.09 3.61 5.96 -2.39 -0.01 3.60 16 17 C -0.06 -1.94 4.97 -19.84 -0.10 -2.04 16 18 C -0.12 -3.34 8.03 22.27 0.18 -3.16 16 19 C -0.11 -2.42 10.05 22.27 0.22 -2.19 16 20 C -0.11 -2.11 10.05 22.26 0.22 -1.88 16 21 C -0.11 -2.58 9.83 22.29 0.22 -2.36 16 22 C -0.04 -1.31 6.31 22.33 0.14 -1.17 16 23 Cl -0.08 -2.32 27.05 -2.72 -0.07 -2.40 16 24 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 25 H 0.40 20.61 7.90 -92.71 -0.73 19.88 16 26 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.12 3.56 7.06 -2.39 -0.02 3.54 16 28 H 0.12 3.64 7.33 -2.91 -0.02 3.62 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -61.03 280.67 2.68 -58.35 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.44 Total: 25.42 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 2.60 Total: -9.38 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.25 Total: -83.96 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.38 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.40 kcal Total: -61.03 2.68 -58.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.201 kcal (2) G-P(sol) polarization free energy of solvation -61.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds