Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00417 * 2 1 4 4 H 1.48499 * 109.46968 * 85.19506 * 3 2 1 5 5 H 1.48497 * 109.47723 * 205.19555 * 3 2 1 6 6 H 1.48503 * 109.47077 * 325.19978 * 3 2 1 7 7 C 1.37876 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00667 * 173.63368 * 7 2 1 9 9 C 1.50709 * 119.99487 * 353.63024 * 7 2 1 10 10 H 1.09003 * 110.85555 * 55.89764 * 9 7 2 11 11 C 1.54627 * 110.96896 * 292.10387 * 9 7 2 12 12 C 1.51344 * 104.16411 * 217.10943 * 11 9 7 13 13 O 1.21288 * 124.92778 * 196.22822 * 12 11 9 14 14 N 1.34424 * 110.13135 * 16.20131 * 12 11 9 15 15 C 1.39981 * 124.35095 * 180.41472 * 14 12 11 16 16 C 1.38851 * 120.07495 * 269.75799 * 15 14 12 17 17 C 1.38112 * 119.94024 * 179.69726 * 16 15 14 18 18 C 1.38298 * 120.09517 * 0.59401 * 17 16 15 19 19 C 1.38266 * 120.14382 * 359.68051 * 18 17 16 20 20 C 1.38226 * 120.05903 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.04670 * 180.02562 * 20 19 18 22 22 C 1.46759 * 111.29918 * 0.44263 * 14 12 11 23 23 H 0.96997 * 119.99915 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.48770 * 335.76119 * 11 9 7 25 25 H 1.09000 * 110.47999 * 98.40869 * 11 9 7 26 26 H 1.08004 * 120.02840 * 359.97438 * 16 15 14 27 27 H 1.07995 * 119.95555 * 180.27430 * 17 16 15 28 28 H 1.07999 * 119.93011 * 179.69772 * 18 17 16 29 29 H 1.08001 * 119.96424 * 180.02562 * 19 18 17 30 30 H 1.08997 * 110.24432 * 223.97982 * 22 14 12 31 31 H 1.09000 * 110.32361 * 102.02042 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3952 2.1050 1.3952 5 1 3.5939 1.4130 -0.5960 6 1 1.5012 2.6213 -0.7991 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1042 9 6 1.2580 -2.4952 0.1437 10 1 0.4916 -2.5902 -0.6256 11 6 0.6433 -2.6268 1.5564 12 6 0.7937 -4.0953 1.8904 13 8 0.1986 -4.6703 2.7772 14 7 1.6821 -4.6697 1.0611 15 6 2.0403 -6.0223 1.1014 16 6 3.1070 -6.4365 1.8878 17 6 3.4541 -7.7726 1.9304 18 6 2.7484 -8.6966 1.1814 19 6 1.6891 -8.2875 0.3926 20 6 1.3326 -6.9527 0.3501 21 17 0.0022 -6.4394 -0.6399 22 6 2.2287 -3.6964 0.1084 23 1 -0.4850 0.8400 -0.0004 24 1 1.1942 -2.0150 2.2707 25 1 -0.4093 -2.3440 1.5422 26 1 3.6620 -5.7151 2.4692 27 1 4.2809 -8.0957 2.5454 28 1 3.0252 -9.7401 1.2129 29 1 1.1398 -9.0116 -0.1908 30 1 2.2610 -4.1259 -0.8929 31 1 3.2265 -3.3842 0.4166 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = -16.332855 kcal Electronic energy + Delta-G solvation = -17539.950407 eV Core-core repulsion = 14618.892935 eV Total energy + Delta-G solvation = -2921.057471 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24024 -38.48599 -36.24841 -35.76902 -33.56247 -31.58038 -30.77165 -28.67222 -26.91788 -24.84222 -22.77235 -22.53578 -20.34958 -19.27631 -17.34361 -16.67236 -16.26386 -15.68841 -14.95800 -14.68321 -14.49137 -14.03014 -13.81437 -13.28816 -12.90577 -12.79876 -12.33440 -12.08888 -11.93244 -11.46117 -11.38867 -11.09703 -10.87943 -10.72448 -10.65402 -10.29519 -9.66740 -9.56332 -9.04609 -8.83778 -8.59812 -8.47060 -8.30826 -6.17800 -4.22690 1.11031 1.20565 2.28431 3.23758 3.27970 3.32299 3.33743 3.49960 3.56757 4.32877 4.78483 4.89575 5.14926 5.15775 5.34316 5.37525 5.56164 5.74298 5.89709 6.07194 6.10265 6.30025 6.35069 6.39613 6.47048 6.66956 6.72607 7.24937 7.34907 7.57456 7.64743 7.79165 8.16321 8.78522 8.88778 9.43195 10.92271 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.005609 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.594983 B = 4991.047925 C = 5230.446853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.049 3.951 10 H 0.052 0.948 11 C -0.131 4.131 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.588 5.588 15 C 0.169 3.831 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.034 4.034 21 Cl -0.055 7.055 22 C 0.112 3.888 23 H 0.264 0.736 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -13.693 0.055 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.030 3.970 10 H 0.071 0.929 11 C -0.171 4.171 12 C 0.314 3.686 13 O -0.427 6.427 14 N -0.320 5.320 15 C 0.078 3.922 16 C -0.123 4.123 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.063 4.063 21 Cl -0.026 7.026 22 C -0.009 4.009 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.177 -13.840 0.422 14.783 hybrid contribution 0.322 0.930 -0.114 0.991 sum 5.499 -12.910 0.308 14.036 Atomic orbital electron populations 1.69959 1.06025 1.27110 1.48864 1.24977 0.94824 0.99309 0.94427 0.86540 0.79921 0.83216 0.78128 1.20563 1.19728 1.21180 1.20947 0.93461 0.89646 1.51897 0.91858 1.19645 0.93578 0.91318 0.92433 0.92943 1.22499 1.04167 0.88597 1.01844 1.21997 0.76266 0.91089 0.79235 1.90615 1.48621 1.70806 1.32619 1.45987 1.43979 1.05407 1.36662 1.17362 0.94437 0.84167 0.96243 1.21410 0.96236 0.96563 0.98124 1.21114 1.00053 0.92507 0.99295 1.21098 0.95442 0.99913 0.96724 1.20974 0.98178 0.93398 1.00272 1.21462 0.92982 0.94241 0.97590 1.98387 1.45065 1.91299 1.67844 1.22566 0.98860 0.88955 0.90481 0.92616 0.88741 0.88873 0.84897 0.85188 0.85097 0.84815 0.92070 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.01 13.03 55.43 0.72 -23.29 16 2 C 0.07 1.76 5.33 -17.82 -0.10 1.67 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.03 8.38 -34.44 -0.29 -13.32 16 8 H 0.06 1.53 7.61 -52.49 -0.40 1.14 16 9 C 0.05 1.14 2.92 -90.13 -0.26 0.87 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 11 C -0.13 -3.00 6.01 -26.71 -0.16 -3.16 16 12 C 0.52 11.61 7.99 -10.83 -0.09 11.52 16 13 O -0.55 -13.53 17.71 5.55 0.10 -13.43 16 14 N -0.59 -11.47 2.34 -112.21 -0.26 -11.73 16 15 C 0.17 2.92 5.38 -83.64 -0.45 2.47 16 16 C -0.10 -1.50 9.97 -39.40 -0.39 -1.89 16 17 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 18 C -0.11 -1.21 10.04 -39.55 -0.40 -1.60 16 19 C -0.11 -1.36 9.82 -39.58 -0.39 -1.75 16 20 C -0.03 -0.55 6.34 -39.32 -0.25 -0.80 16 21 Cl -0.06 -0.92 28.44 -51.86 -1.47 -2.39 16 22 C 0.11 2.18 6.84 -3.12 -0.02 2.15 16 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.09 2.18 7.89 -51.93 -0.41 1.77 16 25 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 26 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.23 7.74 -51.93 -0.40 0.83 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -29.14 289.63 -8.07 -37.21 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -3.31 Total: -0.23 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.19 Total: -5.48 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.46 Total: -35.02 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.10 Total: -13.43 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.47 Total: -2.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.14 -8.07 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.873 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds