Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00417 * 2 1 4 4 H 1.48499 * 109.46968 * 85.19506 * 3 2 1 5 5 H 1.48497 * 109.47723 * 205.19555 * 3 2 1 6 6 H 1.48503 * 109.47077 * 325.19978 * 3 2 1 7 7 C 1.37876 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00667 * 173.63368 * 7 2 1 9 9 C 1.50709 * 119.99487 * 353.63024 * 7 2 1 10 10 H 1.09003 * 110.85555 * 55.89764 * 9 7 2 11 11 C 1.54627 * 110.96896 * 292.10387 * 9 7 2 12 12 C 1.51344 * 104.16411 * 217.10943 * 11 9 7 13 13 O 1.21288 * 124.92778 * 196.22822 * 12 11 9 14 14 N 1.34424 * 110.13135 * 16.20131 * 12 11 9 15 15 C 1.39981 * 124.35095 * 180.41472 * 14 12 11 16 16 C 1.38851 * 120.07495 * 269.75799 * 15 14 12 17 17 C 1.38112 * 119.94024 * 179.69726 * 16 15 14 18 18 C 1.38298 * 120.09517 * 0.59401 * 17 16 15 19 19 C 1.38266 * 120.14382 * 359.68051 * 18 17 16 20 20 C 1.38226 * 120.05903 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.04670 * 180.02562 * 20 19 18 22 22 C 1.46759 * 111.29918 * 0.44263 * 14 12 11 23 23 H 0.96997 * 119.99915 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.48770 * 335.76119 * 11 9 7 25 25 H 1.09000 * 110.47999 * 98.40869 * 11 9 7 26 26 H 1.08004 * 120.02840 * 359.97438 * 16 15 14 27 27 H 1.07995 * 119.95555 * 180.27430 * 17 16 15 28 28 H 1.07999 * 119.93011 * 179.69772 * 18 17 16 29 29 H 1.08001 * 119.96424 * 180.02562 * 19 18 17 30 30 H 1.08997 * 110.24432 * 223.97982 * 22 14 12 31 31 H 1.09000 * 110.32361 * 102.02042 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3952 2.1050 1.3952 5 1 3.5939 1.4130 -0.5960 6 1 1.5012 2.6213 -0.7991 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1042 9 6 1.2580 -2.4952 0.1437 10 1 0.4916 -2.5902 -0.6256 11 6 0.6433 -2.6268 1.5564 12 6 0.7937 -4.0953 1.8904 13 8 0.1986 -4.6703 2.7772 14 7 1.6821 -4.6697 1.0611 15 6 2.0403 -6.0223 1.1014 16 6 3.1070 -6.4365 1.8878 17 6 3.4541 -7.7726 1.9304 18 6 2.7484 -8.6966 1.1814 19 6 1.6891 -8.2875 0.3926 20 6 1.3326 -6.9527 0.3501 21 17 0.0022 -6.4394 -0.6399 22 6 2.2287 -3.6964 0.1084 23 1 -0.4850 0.8400 -0.0004 24 1 1.1942 -2.0150 2.2707 25 1 -0.4093 -2.3440 1.5422 26 1 3.6620 -5.7151 2.4692 27 1 4.2809 -8.0957 2.5454 28 1 3.0252 -9.7401 1.2129 29 1 1.1398 -9.0116 -0.1908 30 1 2.2610 -4.1259 -0.8929 31 1 3.2265 -3.3842 0.4166 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = -31.705288 kcal Electronic energy + Delta-G solvation = -17540.617005 eV Core-core repulsion = 14618.892935 eV Total energy + Delta-G solvation = -2921.724070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74622 -39.75314 -37.54929 -37.44777 -35.28115 -33.23370 -31.79018 -30.09111 -28.71130 -26.65810 -23.93495 -23.66569 -22.18408 -20.73107 -18.91795 -18.35728 -17.48813 -17.11404 -16.57072 -16.39384 -15.76851 -15.56624 -14.86508 -14.68959 -14.59897 -14.26237 -14.19261 -13.73607 -13.10195 -12.88175 -12.68382 -12.53195 -12.52038 -12.49182 -12.16019 -11.90147 -11.46826 -11.39974 -10.81022 -10.51591 -9.95368 -9.90030 -9.69182 -8.16272 -6.26941 0.04411 0.19531 1.11055 1.46666 1.49383 1.51291 1.58661 2.01405 2.45000 2.56646 3.16533 3.74570 3.81629 4.05323 4.11050 4.31371 4.32314 4.33857 4.42754 4.62078 4.76700 4.84186 4.85344 5.17299 5.28660 5.34810 5.37264 5.58283 5.65442 5.79446 5.91837 5.96576 6.22749 6.81849 7.17635 7.42609 8.94165 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.005609 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.594983 B = 4991.047925 C = 5230.446853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.047 3.953 10 H 0.023 0.977 11 C -0.123 4.123 12 C 0.523 3.477 13 O -0.579 6.579 14 N -0.574 5.574 15 C 0.123 3.877 16 C -0.114 4.114 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.108 4.108 20 C -0.056 4.056 21 Cl -0.077 7.077 22 C 0.123 3.877 23 H 0.263 0.737 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.169 0.831 28 H 0.177 0.823 29 H 0.157 0.843 30 H 0.072 0.928 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 -15.752 0.269 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.028 3.972 10 H 0.041 0.959 11 C -0.164 4.164 12 C 0.314 3.686 13 O -0.459 6.459 14 N -0.304 5.304 15 C 0.032 3.968 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.084 4.084 21 Cl -0.049 7.049 22 C 0.003 3.997 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.187 0.813 28 H 0.194 0.806 29 H 0.175 0.825 30 H 0.091 0.909 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.714 -15.925 0.611 17.705 hybrid contribution -0.398 1.422 -0.184 1.488 sum 7.316 -14.503 0.428 16.249 Atomic orbital electron populations 1.70091 1.07574 1.27743 1.50264 1.25759 0.95469 1.02642 0.94234 0.85539 0.79013 0.79115 0.77985 1.20379 1.18481 1.21480 1.21295 0.93988 0.90344 1.50984 0.90941 1.19506 0.93629 0.92655 0.91403 0.95929 1.22295 1.02554 0.89759 1.01799 1.21687 0.76787 0.90646 0.79445 1.90581 1.50059 1.71185 1.34070 1.45743 1.42620 1.06803 1.35187 1.17726 0.96959 0.82755 0.99316 1.21579 0.95595 0.98428 0.97777 1.21580 1.00472 0.90938 0.98762 1.21658 0.93401 1.01965 0.94227 1.21360 0.98753 0.92145 1.00478 1.21685 0.92893 0.95598 0.98199 1.98375 1.46295 1.91670 1.68511 1.22385 0.98235 0.87754 0.91338 0.92789 0.89259 0.91293 0.84717 0.81314 0.80590 0.82517 0.90921 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.45 13.03 21.45 0.28 -51.17 16 2 C 0.02 1.00 5.33 84.65 0.45 1.45 16 3 Si 0.96 41.12 29.54 68.60 2.03 43.14 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -26.59 8.38 25.60 0.21 -26.38 16 8 H 0.07 3.45 7.61 -2.91 -0.02 3.43 16 9 C 0.05 2.24 2.92 -10.48 -0.03 2.21 16 10 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 11 C -0.12 -5.92 6.01 30.61 0.18 -5.74 16 12 C 0.52 23.93 7.99 87.92 0.70 24.64 16 13 O -0.58 -29.30 17.71 -3.06 -0.05 -29.36 16 14 N -0.57 -22.51 2.34 -627.50 -1.47 -23.98 16 15 C 0.12 4.12 5.38 38.16 0.21 4.32 16 16 C -0.11 -3.04 9.97 22.39 0.22 -2.82 16 17 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 18 C -0.09 -1.53 10.04 22.29 0.22 -1.31 16 19 C -0.11 -2.36 9.82 22.27 0.22 -2.14 16 20 C -0.06 -1.71 6.34 22.44 0.14 -1.57 16 21 Cl -0.08 -2.61 28.44 -2.72 -0.08 -2.69 16 22 C 0.12 4.81 6.84 86.83 0.59 5.40 16 23 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 24 H 0.09 4.30 7.89 -2.39 -0.02 4.28 16 25 H 0.07 3.59 8.14 -2.39 -0.02 3.57 16 26 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.08 2.93 7.74 -2.39 -0.02 2.91 16 Total: -1.00 -65.06 289.63 5.20 -59.86 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.14 Total: 7.69 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 3.35 Total: -3.50 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.19 Total: -75.14 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.08 Total: -2.69 kcal Total: -65.06 5.20 -59.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.155 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds