Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48507 * 109.46814 * 269.99435 * 3 2 1 5 5 H 1.48500 * 109.47241 * 29.99705 * 3 2 1 6 6 H 1.48499 * 109.47234 * 150.00153 * 3 2 1 7 7 C 1.37885 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99604 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.88907 * 303.80464 * 9 7 2 11 11 C 1.54620 * 110.97297 * 67.62139 * 9 7 2 12 12 C 1.51288 * 104.25979 * 142.69768 * 11 9 7 13 13 O 1.21292 * 124.94843 * 164.01933 * 12 11 9 14 14 N 1.34419 * 110.11083 * 344.14310 * 12 11 9 15 15 C 1.39975 * 124.35009 * 179.43986 * 14 12 11 16 16 C 1.38852 * 120.07475 * 269.67824 * 15 14 12 17 17 C 1.38117 * 119.94360 * 180.02562 * 16 15 14 18 18 C 1.38295 * 120.08922 * 0.02562 * 17 16 15 19 19 C 1.38258 * 120.15552 * 359.74510 * 18 17 16 20 20 C 1.38230 * 120.05399 * 0.50991 * 19 18 17 21 21 Cl 1.73599 * 120.04894 * 179.77239 * 20 19 18 22 22 C 1.46764 * 111.29884 * 359.16987 * 14 12 11 23 23 H 0.96995 * 120.00319 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.48651 * 261.58787 * 11 9 7 25 25 H 1.09001 * 110.48905 * 24.10162 * 11 9 7 26 26 H 1.08001 * 120.02694 * 0.04254 * 16 15 14 27 27 H 1.07998 * 119.95675 * 179.97438 * 17 16 15 28 28 H 1.08001 * 119.92209 * 179.97438 * 18 17 16 29 29 H 1.07997 * 119.97817 * 180.27576 * 19 18 17 30 30 H 1.09004 * 110.24258 * 136.28186 * 22 14 12 31 31 H 1.08997 * 110.25002 * 258.27855 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5656 -2.5522 0.8465 11 6 0.4987 -2.7038 -1.3347 12 6 0.6220 -4.1866 -1.6084 13 8 -0.0532 -4.8048 -2.4041 14 7 1.5870 -4.7199 -0.8394 15 6 1.9429 -6.0736 -0.8442 16 6 1.3173 -6.9606 0.0218 17 6 1.6710 -8.2957 0.0152 18 6 2.6475 -8.7500 -0.8523 19 6 3.2696 -7.8711 -1.7196 20 6 2.9242 -6.5326 -1.7145 21 17 3.7095 -5.4281 -2.7994 22 6 2.2238 -3.6992 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5480 -2.4181 -1.2306 25 1 0.9724 -2.1301 -2.1313 26 1 0.5547 -6.6069 0.6998 27 1 1.1849 -8.9857 0.6889 28 1 2.9223 -9.7945 -0.8550 29 1 4.0286 -8.2298 -2.3989 30 1 2.3577 -4.0756 1.0153 31 1 3.1842 -3.4065 -0.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278813.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = -16.572423 kcal Electronic energy + Delta-G solvation = -17536.237640 eV Core-core repulsion = 14615.169780 eV Total energy + Delta-G solvation = -2921.067860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23584 -38.48220 -36.26718 -35.76175 -33.56482 -31.56770 -30.77548 -28.66366 -26.91309 -24.84203 -22.73634 -22.56295 -20.34430 -19.27442 -17.32879 -16.68837 -16.25825 -15.69949 -14.91725 -14.69707 -14.47808 -14.03913 -13.80716 -13.29591 -12.91323 -12.78442 -12.31105 -12.08103 -11.95020 -11.45814 -11.38559 -11.07844 -10.86891 -10.74230 -10.66332 -10.30709 -9.67598 -9.51288 -9.05367 -8.85339 -8.62578 -8.44120 -8.30316 -6.17594 -4.23068 1.10994 1.20720 2.26740 3.24607 3.30099 3.32382 3.34146 3.49778 3.56872 4.33163 4.78590 4.90155 5.15071 5.16269 5.34425 5.37928 5.58641 5.73968 5.89304 6.08642 6.09116 6.30264 6.35361 6.39916 6.48736 6.68097 6.75615 7.28526 7.35166 7.54145 7.65864 7.79307 8.16173 8.78296 8.89928 9.43289 10.92381 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.005674 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.756119 B = 4933.660896 C = 5199.476712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.049 3.951 10 H 0.050 0.950 11 C -0.128 4.128 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.589 5.589 15 C 0.170 3.830 16 C -0.103 4.103 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.034 4.034 21 Cl -0.057 7.057 22 C 0.111 3.889 23 H 0.264 0.736 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -13.660 0.363 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.030 3.970 10 H 0.068 0.932 11 C -0.168 4.168 12 C 0.314 3.686 13 O -0.427 6.427 14 N -0.321 5.321 15 C 0.078 3.922 16 C -0.123 4.123 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.063 4.063 21 Cl -0.028 7.028 22 C -0.009 4.009 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.382 -13.774 -0.148 14.788 hybrid contribution 0.552 0.991 -0.113 1.140 sum 5.934 -12.783 -0.261 14.095 Atomic orbital electron populations 1.69941 1.05990 1.27130 1.49113 1.24976 0.94867 0.99305 0.94465 0.86534 0.79835 0.83061 0.78260 1.20542 1.21154 1.19745 1.20945 0.92961 0.89439 1.52421 0.91869 1.19652 0.92719 0.91363 0.93266 0.93197 1.22458 1.04143 0.88014 1.02221 1.22025 0.77132 0.91632 0.77859 1.90615 1.47023 1.68796 1.36245 1.45997 1.37809 1.04564 1.43711 1.17369 0.94342 0.85151 0.95312 1.21422 0.99459 0.92980 0.98439 1.21121 0.97541 0.95122 0.99146 1.21095 0.96698 0.99598 0.95799 1.20966 1.00973 0.90783 1.00111 1.21466 0.97585 0.91715 0.95490 1.98380 1.78934 1.62973 1.62545 1.22584 0.98024 0.87808 0.92525 0.92613 0.88751 0.88727 0.84822 0.85155 0.85097 0.84842 0.92096 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 12.84 55.43 0.71 -23.20 16 2 C 0.07 1.74 5.37 -17.82 -0.10 1.64 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.52 -13.02 8.39 -34.44 -0.29 -13.31 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.05 1.12 2.97 -90.14 -0.27 0.85 16 10 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.13 -2.95 5.81 -26.74 -0.16 -3.11 16 12 C 0.52 11.64 7.99 -10.86 -0.09 11.55 16 13 O -0.55 -13.59 17.71 5.55 0.10 -13.49 16 14 N -0.59 -11.50 2.34 -112.23 -0.26 -11.76 16 15 C 0.17 2.93 5.38 -83.64 -0.45 2.48 16 16 C -0.10 -1.51 9.97 -39.40 -0.39 -1.90 16 17 C -0.11 -1.26 10.04 -39.60 -0.40 -1.65 16 18 C -0.11 -1.21 10.04 -39.55 -0.40 -1.61 16 19 C -0.11 -1.36 9.82 -39.58 -0.39 -1.75 16 20 C -0.03 -0.54 6.34 -39.32 -0.25 -0.79 16 21 Cl -0.06 -0.94 28.44 -51.86 -1.47 -2.42 16 22 C 0.11 2.16 6.83 -3.12 -0.02 2.14 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.09 2.29 8.14 -51.93 -0.42 1.87 16 25 H 0.09 2.26 7.89 -51.93 -0.41 1.85 16 26 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 27 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.32 7.74 -51.93 -0.40 0.92 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -29.03 289.33 -8.08 -37.12 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.31 Total: -0.23 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.19 Total: -5.45 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.45 Total: -34.97 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.10 Total: -13.49 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.47 Total: -2.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.03 -8.08 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278813.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.543 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds