Wall clock time and date at job start Mon Mar 30 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48507 * 109.46814 * 269.99435 * 3 2 1 5 5 H 1.48500 * 109.47241 * 29.99705 * 3 2 1 6 6 H 1.48499 * 109.47234 * 150.00153 * 3 2 1 7 7 C 1.37885 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99604 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.88907 * 303.80464 * 9 7 2 11 11 C 1.54620 * 110.97297 * 67.62139 * 9 7 2 12 12 C 1.51288 * 104.25979 * 142.69768 * 11 9 7 13 13 O 1.21292 * 124.94843 * 164.01933 * 12 11 9 14 14 N 1.34419 * 110.11083 * 344.14310 * 12 11 9 15 15 C 1.39975 * 124.35009 * 179.43986 * 14 12 11 16 16 C 1.38852 * 120.07475 * 269.67824 * 15 14 12 17 17 C 1.38117 * 119.94360 * 180.02562 * 16 15 14 18 18 C 1.38295 * 120.08922 * 0.02562 * 17 16 15 19 19 C 1.38258 * 120.15552 * 359.74510 * 18 17 16 20 20 C 1.38230 * 120.05399 * 0.50991 * 19 18 17 21 21 Cl 1.73599 * 120.04894 * 179.77239 * 20 19 18 22 22 C 1.46764 * 111.29884 * 359.16987 * 14 12 11 23 23 H 0.96995 * 120.00319 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.48651 * 261.58787 * 11 9 7 25 25 H 1.09001 * 110.48905 * 24.10162 * 11 9 7 26 26 H 1.08001 * 120.02694 * 0.04254 * 16 15 14 27 27 H 1.07998 * 119.95675 * 179.97438 * 17 16 15 28 28 H 1.08001 * 119.92209 * 179.97438 * 18 17 16 29 29 H 1.07997 * 119.97817 * 180.27576 * 19 18 17 30 30 H 1.09004 * 110.24258 * 136.28186 * 22 14 12 31 31 H 1.08997 * 110.25002 * 258.27855 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5656 -2.5522 0.8465 11 6 0.4987 -2.7038 -1.3347 12 6 0.6220 -4.1866 -1.6084 13 8 -0.0532 -4.8048 -2.4041 14 7 1.5870 -4.7199 -0.8394 15 6 1.9429 -6.0736 -0.8442 16 6 1.3173 -6.9606 0.0218 17 6 1.6710 -8.2957 0.0152 18 6 2.6475 -8.7500 -0.8523 19 6 3.2696 -7.8711 -1.7196 20 6 2.9242 -6.5326 -1.7145 21 17 3.7095 -5.4281 -2.7994 22 6 2.2238 -3.6992 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5480 -2.4181 -1.2306 25 1 0.9724 -2.1301 -2.1313 26 1 0.5547 -6.6069 0.6998 27 1 1.1849 -8.9857 0.6889 28 1 2.9223 -9.7945 -0.8550 29 1 4.0286 -8.2298 -2.3989 30 1 2.3577 -4.0756 1.0153 31 1 3.1842 -3.4065 -0.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278813.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:05 Heat of formation + Delta-G solvation = -31.778547 kcal Electronic energy + Delta-G solvation = -17536.897027 eV Core-core repulsion = 14615.169780 eV Total energy + Delta-G solvation = -2921.727247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.74490 -39.75170 -37.54792 -37.44660 -35.28567 -33.22127 -31.79443 -30.08469 -28.71239 -26.65900 -23.90137 -23.69498 -22.17576 -20.73386 -18.90106 -18.38419 -17.48096 -17.12124 -16.55375 -16.39499 -15.74236 -15.59606 -14.86372 -14.72242 -14.57095 -14.25395 -14.16492 -13.74611 -13.10550 -12.86686 -12.70776 -12.54413 -12.52517 -12.46337 -12.15537 -11.92507 -11.47337 -11.35012 -10.86033 -10.50208 -9.94835 -9.90288 -9.68967 -8.16330 -6.27314 0.04417 0.19348 1.10512 1.46196 1.48516 1.52263 1.57502 2.01037 2.44562 2.56506 3.16595 3.76691 3.81139 4.05479 4.11814 4.31513 4.32314 4.33453 4.42801 4.62051 4.76796 4.84557 4.87343 5.17157 5.29312 5.36372 5.37553 5.56134 5.65271 5.79798 5.92234 5.96732 6.23029 6.80771 7.18139 7.42358 8.93643 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.005674 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.756119 B = 4933.660896 C = 5199.476712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.047 3.953 10 H 0.031 0.969 11 C -0.120 4.120 12 C 0.522 3.478 13 O -0.579 6.579 14 N -0.574 5.574 15 C 0.123 3.877 16 C -0.116 4.116 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.108 4.108 20 C -0.054 4.054 21 Cl -0.076 7.076 22 C 0.122 3.878 23 H 0.264 0.736 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.169 0.831 28 H 0.177 0.823 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -16.000 1.084 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.028 3.972 10 H 0.049 0.951 11 C -0.161 4.161 12 C 0.314 3.686 13 O -0.459 6.459 14 N -0.304 5.304 15 C 0.033 3.967 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.082 4.082 21 Cl -0.047 7.047 22 C 0.002 3.998 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.186 0.814 28 H 0.194 0.806 29 H 0.176 0.824 30 H 0.102 0.898 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.957 -16.135 0.598 17.581 hybrid contribution 0.090 1.564 -0.297 1.594 sum 7.046 -14.572 0.302 16.189 Atomic orbital electron populations 1.70060 1.07369 1.27750 1.50321 1.25722 0.95539 1.02479 0.94287 0.85573 0.78915 0.79211 0.78090 1.20550 1.21182 1.18683 1.21274 0.93354 0.90345 1.51650 0.91382 1.19542 0.93032 0.92450 0.92200 0.95120 1.22243 1.02748 0.89121 1.02000 1.21708 0.77778 0.91090 0.78062 1.90580 1.48473 1.69163 1.37709 1.45749 1.36374 1.06024 1.42224 1.17723 0.96882 0.83951 0.98167 1.21575 0.99527 0.94261 0.98194 1.21573 0.97026 0.94003 0.99160 1.21654 0.94743 1.01322 0.93522 1.21362 1.01284 0.89390 1.00638 1.21672 0.98062 0.92911 0.95573 1.98367 1.79216 1.63936 1.63179 1.22400 0.96792 0.86763 0.93854 0.92742 0.90809 0.90124 0.84982 0.81398 0.80574 0.82421 0.89832 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.83 12.84 21.45 0.28 -50.56 16 2 C 0.02 1.04 5.37 84.66 0.45 1.50 16 3 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.53 -26.78 8.39 25.60 0.21 -26.56 16 8 H 0.07 3.32 7.60 -2.91 -0.02 3.30 16 9 C 0.05 2.20 2.97 -10.49 -0.03 2.17 16 10 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 11 C -0.12 -5.82 5.81 30.59 0.18 -5.64 16 12 C 0.52 24.03 7.99 87.90 0.70 24.73 16 13 O -0.58 -29.47 17.71 -3.07 -0.05 -29.52 16 14 N -0.57 -22.58 2.34 -627.56 -1.47 -24.05 16 15 C 0.12 4.14 5.38 38.16 0.21 4.34 16 16 C -0.12 -3.16 9.97 22.39 0.22 -2.93 16 17 C -0.10 -1.83 10.04 22.25 0.22 -1.61 16 18 C -0.09 -1.53 10.04 22.29 0.22 -1.31 16 19 C -0.11 -2.32 9.82 22.27 0.22 -2.10 16 20 C -0.05 -1.64 6.34 22.44 0.14 -1.50 16 21 Cl -0.08 -2.47 28.44 -2.72 -0.08 -2.54 16 22 C 0.12 4.78 6.83 86.83 0.59 5.37 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.07 3.81 8.14 -2.39 -0.02 3.79 16 25 H 0.08 4.06 7.89 -2.39 -0.02 4.04 16 26 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 27 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 28 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 29 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.68 7.74 -2.39 -0.02 2.66 16 Total: -1.00 -64.48 289.33 5.19 -59.29 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.14 Total: 7.49 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 3.35 Total: -3.54 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.19 Total: -74.61 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.54 kcal Total: -64.48 5.19 -59.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278813.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.510 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds