Wall clock time and date at job start Mon Mar 30 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48506 * 109.47077 * 270.00217 * 3 2 1 5 5 H 1.48497 * 109.47311 * 30.00138 * 3 2 1 6 6 H 1.48496 * 109.47279 * 150.00156 * 3 2 1 7 7 C 1.37874 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00367 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.28774 * 301.97708 * 9 7 2 11 11 N 1.46762 * 110.04179 * 63.99857 * 9 7 2 12 12 C 1.34417 * 111.30037 * 102.29840 * 11 9 7 13 13 O 1.21283 * 124.94355 * 180.27867 * 12 11 9 14 14 C 1.51286 * 110.11517 * 0.02562 * 12 11 9 15 15 C 1.54479 * 110.24886 * 180.02562 * 9 7 2 16 16 H 1.09001 * 110.99877 * 24.54661 * 15 9 7 17 17 C 1.50698 * 110.97021 * 148.29408 * 15 9 7 18 18 C 1.38261 * 119.99406 * 233.83061 * 17 15 9 19 19 C 1.38223 * 120.02541 * 179.97438 * 18 17 15 20 20 C 1.38235 * 120.01676 * 0.02562 * 19 18 17 21 21 C 1.38339 * 119.98371 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.01274 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99214 * 53.55676 * 17 15 9 24 24 H 0.96996 * 120.00676 * 359.97438 * 1 2 3 25 25 H 0.96995 * 124.34962 * 282.14415 * 11 9 7 26 26 H 1.09000 * 110.48290 * 135.17506 * 14 12 11 27 27 H 1.08997 * 110.48854 * 257.81707 * 14 12 11 28 28 H 1.07998 * 119.99127 * 359.97438 * 18 17 15 29 29 H 1.08008 * 119.99223 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.00986 * 180.02562 * 20 19 18 31 31 H 1.07995 * 120.00455 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5936 -2.5560 0.8670 11 7 0.4758 -2.6323 -1.2395 12 6 1.0795 -3.4633 -2.1064 13 8 0.6560 -3.7463 -3.2071 14 6 2.3672 -3.9896 -1.5118 15 6 2.2391 -3.6867 -0.0005 16 1 3.2005 -3.3950 0.4222 17 6 1.6636 -4.8669 0.7390 18 6 2.3777 -5.4531 1.7677 19 6 1.8503 -6.5353 2.4468 20 6 0.6087 -7.0326 2.0975 21 6 -0.1058 -6.4472 1.0676 22 17 -1.6654 -7.0708 0.6288 23 6 0.4198 -5.3596 0.3926 24 1 -0.4851 0.8400 0.0004 25 1 -0.3655 -2.1805 -1.4098 26 1 2.4543 -5.0631 -1.6800 27 1 3.2246 -3.4656 -1.9342 28 1 3.3480 -5.0652 2.0408 29 1 2.4084 -6.9925 3.2506 30 1 0.1966 -7.8779 2.6285 31 1 -0.1395 -4.8992 -0.4082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:41 Heat of formation + Delta-G solvation = -31.360114 kcal Electronic energy + Delta-G solvation = -17655.638691 eV Core-core repulsion = 14733.929589 eV Total energy + Delta-G solvation = -2921.709102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03780 -38.40952 -36.35233 -35.58496 -32.74588 -31.61741 -30.53623 -28.99348 -27.52147 -24.46185 -22.62844 -22.02581 -19.84162 -19.40417 -17.32422 -16.72408 -15.94514 -15.33662 -15.09113 -14.70078 -14.40993 -13.92699 -13.51929 -13.44078 -12.86238 -12.63837 -12.52831 -12.00278 -11.55268 -11.48472 -11.38513 -11.07945 -11.05994 -10.90301 -10.75337 -10.45259 -10.02080 -9.80416 -9.00338 -8.71562 -8.65429 -8.41388 -7.70681 -6.31682 -4.42876 1.34570 1.45474 2.29785 3.16925 3.25245 3.26229 3.60891 3.81083 4.21824 4.61539 4.90520 4.95293 5.11017 5.22440 5.37935 5.45815 5.50976 5.62171 5.77470 5.88761 6.04723 6.23822 6.31725 6.40721 6.45787 6.58809 6.86431 6.98972 7.11487 7.61219 7.91337 8.07736 8.27480 8.68751 9.28622 9.42542 10.75573 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.006212 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.086403 B = 4506.034824 C = 4800.132279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.075 3.925 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.263 3.737 10 H 0.053 0.947 11 N -0.691 5.691 12 C 0.505 3.495 13 O -0.583 6.583 14 C -0.139 4.139 15 C -0.065 4.065 16 H 0.101 0.899 17 C -0.046 4.046 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.032 4.032 22 Cl -0.080 7.080 23 C -0.101 4.101 24 H 0.267 0.733 25 H 0.407 0.593 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -10.717 5.700 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.161 3.839 10 H 0.071 0.929 11 N -0.341 5.341 12 C 0.291 3.709 13 O -0.466 6.466 14 C -0.179 4.179 15 C -0.084 4.084 16 H 0.119 0.881 17 C -0.047 4.047 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.059 4.059 22 Cl -0.051 7.051 23 C -0.119 4.119 24 H 0.077 0.923 25 H 0.245 0.755 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.648 -10.837 5.177 12.299 hybrid contribution -0.113 1.210 -0.037 1.216 sum 2.535 -9.627 5.140 11.204 Atomic orbital electron populations 1.69846 1.06140 1.27671 1.48376 1.25036 0.94919 0.99662 0.93366 0.86470 0.79864 0.82629 0.78347 1.20458 1.21027 1.19571 1.21378 0.93365 0.90015 1.52910 0.91554 1.19355 0.88971 0.91192 0.84399 0.92905 1.46968 1.24866 1.43652 1.18656 1.20761 0.86180 0.79523 0.84465 1.90631 1.70764 1.64167 1.20996 1.22276 0.98370 1.01853 0.95419 1.21357 1.01048 0.92710 0.93291 0.88102 1.19943 0.93294 0.95886 0.95547 1.21184 1.00269 0.95898 0.95587 1.21026 0.95089 0.96852 0.99919 1.20941 0.95313 1.00924 0.97088 1.20907 0.88165 0.97798 0.99008 1.98354 1.27470 1.86711 1.92570 1.21105 0.95895 0.94751 1.00189 0.92277 0.75470 0.89848 0.88207 0.85291 0.85424 0.85507 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.10 12.63 55.43 0.70 -22.40 16 2 C 0.08 1.90 5.41 -17.82 -0.10 1.80 16 3 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -13.03 8.72 -34.44 -0.30 -13.33 16 8 H 0.07 1.56 7.58 -52.49 -0.40 1.16 16 9 C 0.26 5.74 2.47 -68.17 -0.17 5.57 16 10 H 0.05 1.26 7.88 -51.93 -0.41 0.85 16 11 N -0.69 -15.57 4.89 -53.88 -0.26 -15.83 16 12 C 0.51 11.20 7.14 -10.86 -0.08 11.12 16 13 O -0.58 -14.68 18.03 5.55 0.10 -14.58 16 14 C -0.14 -2.51 6.19 -26.72 -0.17 -2.68 16 15 C -0.07 -1.15 2.94 -90.12 -0.27 -1.41 16 16 H 0.10 1.64 7.55 -51.93 -0.39 1.25 16 17 C -0.05 -0.75 4.70 -104.63 -0.49 -1.24 16 18 C -0.11 -1.49 9.69 -39.58 -0.38 -1.87 16 19 C -0.11 -1.31 10.05 -39.59 -0.40 -1.71 16 20 C -0.12 -1.59 9.83 -39.55 -0.39 -1.98 16 21 C -0.03 -0.49 6.32 -39.49 -0.25 -0.74 16 22 Cl -0.08 -1.16 28.96 -51.86 -1.50 -2.66 16 23 C -0.10 -1.71 8.64 -39.55 -0.34 -2.05 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.41 9.65 8.53 -40.82 -0.35 9.30 16 26 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 27 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.13 1.45 7.98 -52.49 -0.42 1.03 16 29 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 2.53 6.10 -52.49 -0.32 2.21 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -27.89 283.56 -8.14 -36.02 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.10 Total: 8.94 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.33 Total: -8.51 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.44 Total: -38.24 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.89 -8.14 -36.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.665 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds