Wall clock time and date at job start Mon Mar 30 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48506 * 109.47077 * 270.00217 * 3 2 1 5 5 H 1.48497 * 109.47311 * 30.00138 * 3 2 1 6 6 H 1.48496 * 109.47279 * 150.00156 * 3 2 1 7 7 C 1.37874 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00367 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.28774 * 301.97708 * 9 7 2 11 11 N 1.46762 * 110.04179 * 63.99857 * 9 7 2 12 12 C 1.34417 * 111.30037 * 102.29840 * 11 9 7 13 13 O 1.21283 * 124.94355 * 180.27867 * 12 11 9 14 14 C 1.51286 * 110.11517 * 0.02562 * 12 11 9 15 15 C 1.54479 * 110.24886 * 180.02562 * 9 7 2 16 16 H 1.09001 * 110.99877 * 24.54661 * 15 9 7 17 17 C 1.50698 * 110.97021 * 148.29408 * 15 9 7 18 18 C 1.38261 * 119.99406 * 233.83061 * 17 15 9 19 19 C 1.38223 * 120.02541 * 179.97438 * 18 17 15 20 20 C 1.38235 * 120.01676 * 0.02562 * 19 18 17 21 21 C 1.38339 * 119.98371 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.01274 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99214 * 53.55676 * 17 15 9 24 24 H 0.96996 * 120.00676 * 359.97438 * 1 2 3 25 25 H 0.96995 * 124.34962 * 282.14415 * 11 9 7 26 26 H 1.09000 * 110.48290 * 135.17506 * 14 12 11 27 27 H 1.08997 * 110.48854 * 257.81707 * 14 12 11 28 28 H 1.07998 * 119.99127 * 359.97438 * 18 17 15 29 29 H 1.08008 * 119.99223 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.00986 * 180.02562 * 20 19 18 31 31 H 1.07995 * 120.00455 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5936 -2.5560 0.8670 11 7 0.4758 -2.6323 -1.2395 12 6 1.0795 -3.4633 -2.1064 13 8 0.6560 -3.7463 -3.2071 14 6 2.3672 -3.9896 -1.5118 15 6 2.2391 -3.6867 -0.0005 16 1 3.2005 -3.3950 0.4222 17 6 1.6636 -4.8669 0.7390 18 6 2.3777 -5.4531 1.7677 19 6 1.8503 -6.5353 2.4468 20 6 0.6087 -7.0326 2.0975 21 6 -0.1058 -6.4472 1.0676 22 17 -1.6654 -7.0708 0.6288 23 6 0.4198 -5.3596 0.3926 24 1 -0.4851 0.8400 0.0004 25 1 -0.3655 -2.1805 -1.4098 26 1 2.4543 -5.0631 -1.6800 27 1 3.2246 -3.4656 -1.9342 28 1 3.3480 -5.0652 2.0408 29 1 2.4084 -6.9925 3.2506 30 1 0.1966 -7.8779 2.6285 31 1 -0.1395 -4.8992 -0.4082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:40 Heat of formation + Delta-G solvation = -47.676250 kcal Electronic energy + Delta-G solvation = -17656.346212 eV Core-core repulsion = 14733.929589 eV Total energy + Delta-G solvation = -2922.416623 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51350 -39.76384 -37.65385 -37.15654 -34.52275 -33.13011 -31.61801 -30.34261 -29.31758 -26.06124 -23.87885 -23.28923 -21.24291 -21.10998 -18.99239 -18.23193 -17.49321 -16.61834 -16.47948 -16.26255 -15.91764 -15.57502 -14.79857 -14.63835 -14.38798 -14.24026 -14.12227 -13.36347 -13.18330 -12.90614 -12.74160 -12.62735 -12.37277 -12.25862 -12.15085 -11.87578 -11.67318 -11.37403 -10.83208 -10.58314 -9.80018 -9.60383 -9.48769 -8.21748 -6.38284 0.26320 0.35897 1.18322 1.42367 1.46067 1.53947 1.86106 2.39295 2.69929 2.83032 3.28361 3.71865 3.79082 3.98177 4.02056 4.18359 4.36858 4.43307 4.49815 4.70120 4.81440 4.90791 5.04349 5.15634 5.27707 5.36491 5.46120 5.68060 5.69341 5.94135 6.08795 6.25462 6.46434 6.84054 7.36430 7.58999 8.84196 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.006212 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.086403 B = 4506.034824 C = 4800.132279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.957 3.043 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.261 3.739 10 H 0.026 0.974 11 N -0.694 5.694 12 C 0.497 3.503 13 O -0.620 6.620 14 C -0.129 4.129 15 C -0.049 4.049 16 H 0.122 0.878 17 C -0.065 4.065 18 C -0.105 4.105 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.048 4.048 22 Cl -0.084 7.084 23 C -0.125 4.125 24 H 0.265 0.735 25 H 0.394 0.606 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -11.926 7.492 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.159 3.841 10 H 0.044 0.956 11 N -0.342 5.342 12 C 0.284 3.716 13 O -0.506 6.506 14 C -0.168 4.168 15 C -0.068 4.068 16 H 0.140 0.860 17 C -0.066 4.066 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.074 4.074 22 Cl -0.056 7.056 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.230 0.770 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.175 0.825 29 H 0.188 0.812 30 H 0.171 0.829 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.107 -12.056 6.993 14.844 hybrid contribution -0.921 1.534 -0.551 1.872 sum 4.186 -10.523 6.441 13.029 Atomic orbital electron populations 1.69966 1.07423 1.27991 1.49885 1.25791 0.95563 1.02746 0.93496 0.85568 0.79231 0.79119 0.77793 1.21157 1.21399 1.18021 1.21804 0.94034 0.90898 1.51635 0.90507 1.19302 0.89122 0.92627 0.83000 0.95585 1.47036 1.24488 1.43474 1.19216 1.21465 0.87350 0.78896 0.83840 1.90593 1.72079 1.65324 1.22635 1.22280 0.96063 1.02970 0.95526 1.21241 1.00608 0.91656 0.93289 0.85954 1.19857 0.93522 0.96120 0.97081 1.21512 1.00990 0.95763 0.94064 1.21503 0.94479 0.95687 0.99904 1.21332 0.95419 1.01060 0.95816 1.21068 0.88464 0.97923 0.99978 1.98346 1.27841 1.86615 1.92752 1.20958 0.96701 0.96128 1.00577 0.92650 0.76984 0.87914 0.86679 0.82510 0.81241 0.82930 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.04 12.63 21.45 0.27 -48.77 16 2 C 0.03 1.30 5.41 84.65 0.46 1.76 16 3 Si 0.96 40.38 29.54 68.60 2.03 42.40 16 4 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.55 -26.14 8.72 25.60 0.22 -25.92 16 8 H 0.08 3.45 7.58 -2.91 -0.02 3.43 16 9 C 0.26 11.52 2.47 44.70 0.11 11.63 16 10 H 0.03 1.29 7.88 -2.38 -0.02 1.27 16 11 N -0.69 -32.42 4.89 -442.98 -2.17 -34.59 16 12 C 0.50 22.46 7.14 87.90 0.63 23.09 16 13 O -0.62 -32.20 18.03 -3.04 -0.05 -32.26 16 14 C -0.13 -4.49 6.19 30.60 0.19 -4.30 16 15 C -0.05 -1.66 2.94 -10.47 -0.03 -1.69 16 16 H 0.12 3.59 7.55 -2.39 -0.02 3.57 16 17 C -0.07 -2.00 4.70 -19.87 -0.09 -2.09 16 18 C -0.11 -2.40 9.69 22.27 0.22 -2.19 16 19 C -0.10 -1.87 10.05 22.27 0.22 -1.64 16 20 C -0.12 -2.63 9.83 22.29 0.22 -2.41 16 21 C -0.05 -1.40 6.32 22.33 0.14 -1.26 16 22 Cl -0.08 -2.43 28.96 -2.72 -0.08 -2.51 16 23 C -0.12 -4.22 8.64 22.29 0.19 -4.03 16 24 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 25 H 0.39 19.83 8.53 -92.71 -0.79 19.04 16 26 H 0.10 3.20 7.90 -2.39 -0.02 3.18 16 27 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 28 H 0.16 2.68 7.98 -2.91 -0.02 2.66 16 29 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.10 4.06 6.10 -2.91 -0.02 4.04 16 Total: -1.00 -61.87 283.56 2.85 -59.03 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.37 Total: 25.75 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 2.48 Total: -9.06 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.90 Total: -83.36 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -61.87 2.85 -59.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.350 kcal (2) G-P(sol) polarization free energy of solvation -61.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds