Wall clock time and date at job start Mon Mar 30 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.21443 * 60.48226 * 9 7 2 11 11 N 1.46768 * 110.24385 * 298.54592 * 9 7 2 12 12 C 1.34414 * 111.29962 * 223.97892 * 11 9 7 13 13 O 1.21278 * 124.94007 * 180.38396 * 12 11 9 14 14 C 1.51281 * 110.11763 * 0.41551 * 12 11 9 15 15 C 1.54482 * 110.24400 * 182.50050 * 9 7 2 16 16 H 1.08995 * 110.96644 * 262.53321 * 15 9 7 17 17 C 1.50700 * 110.97181 * 26.29992 * 15 9 7 18 18 C 1.38266 * 119.99413 * 59.72156 * 17 15 9 19 19 C 1.38220 * 120.02386 * 179.76796 * 18 17 15 20 20 C 1.38242 * 120.01343 * 0.51194 * 19 18 17 21 21 C 1.38333 * 119.98631 * 359.74119 * 20 19 18 22 22 Cl 1.73599 * 120.01274 * 179.97438 * 21 20 19 23 23 C 1.38189 * 119.99187 * 239.99971 * 17 15 9 24 24 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 25 25 H 0.97001 * 124.34365 * 43.96530 * 11 9 7 26 26 H 1.09001 * 110.49064 * 134.92729 * 14 12 11 27 27 H 1.09001 * 110.48380 * 257.56814 * 14 12 11 28 28 H 1.07991 * 119.98540 * 0.02562 * 18 17 15 29 29 H 1.07998 * 119.99353 * 180.27340 * 19 18 17 30 30 H 1.07998 * 120.00656 * 179.76510 * 20 19 18 31 31 H 1.08002 * 120.00823 * 359.95527 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6260 -2.5732 -0.8904 11 7 0.4278 -2.6103 1.2094 12 6 0.5218 -3.8359 1.7531 13 8 -0.0604 -4.1987 2.7532 14 6 1.4602 -4.6968 0.9365 15 6 2.2379 -3.6861 0.0621 16 1 2.4231 -4.0921 -0.9323 17 6 3.5286 -3.2800 0.7256 18 6 3.5189 -2.8077 2.0251 19 6 4.7029 -2.4397 2.6360 20 6 5.8962 -2.5336 1.9444 21 6 5.9058 -3.0011 0.6425 22 17 7.4038 -3.1187 -0.2269 23 6 4.7208 -3.3744 0.0333 24 1 -0.4849 -0.8401 0.0004 25 1 -0.1144 -1.8914 1.5703 26 1 2.1430 -5.2416 1.5885 27 1 0.8961 -5.3881 0.3104 28 1 2.5865 -2.7303 2.5643 29 1 4.6953 -2.0750 3.6525 30 1 6.8208 -2.2424 2.4205 31 1 4.7277 -3.7398 -0.9830 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:42 Heat of formation + Delta-G solvation = -43.253650 kcal Electronic energy + Delta-G solvation = -17983.257573 eV Core-core repulsion = 15061.032728 eV Total energy + Delta-G solvation = -2922.224845 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.71830 -39.80517 -37.78231 -37.15695 -34.73097 -33.27152 -31.59470 -30.33391 -29.04596 -25.75044 -23.88389 -23.53493 -21.37089 -21.26970 -19.49289 -18.10921 -17.56337 -16.81001 -16.36451 -16.05075 -15.82038 -15.57258 -15.37650 -14.61854 -14.44468 -14.27748 -14.04736 -13.49187 -13.31497 -12.96632 -12.70072 -12.44563 -12.24127 -12.17769 -12.09477 -11.95558 -11.58447 -11.05801 -10.89958 -10.58259 -9.71987 -9.66391 -9.43893 -8.59767 -6.39139 0.31489 0.42496 1.20503 1.55213 1.57776 1.70052 1.76897 2.52468 2.64448 2.76990 3.26443 3.62708 3.68425 3.93656 4.00586 4.19116 4.26669 4.36996 4.45578 4.60558 4.75770 4.82533 4.94067 5.03702 5.20541 5.32438 5.47554 5.70432 5.77542 5.94459 6.05601 6.21348 6.36797 6.63928 7.39314 7.39745 8.75857 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.009059 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.878716 B = 3090.275090 C = 4271.591796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 1.102 2.898 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.589 4.589 8 H 0.068 0.932 9 C 0.236 3.764 10 H 0.027 0.973 11 N -0.710 5.710 12 C 0.498 3.502 13 O -0.610 6.610 14 C -0.136 4.136 15 C -0.047 4.047 16 H 0.119 0.881 17 C -0.031 4.031 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.041 4.041 22 Cl -0.071 7.071 23 C -0.113 4.113 24 H 0.263 0.737 25 H 0.394 0.606 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -6.486 -0.821 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.214 4.214 3 Si 0.926 3.074 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.086 0.914 9 C 0.135 3.865 10 H 0.045 0.955 11 N -0.361 5.361 12 C 0.286 3.714 13 O -0.494 6.494 14 C -0.175 4.175 15 C -0.066 4.066 16 H 0.137 0.863 17 C -0.031 4.031 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.068 4.068 22 Cl -0.043 7.043 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.231 0.769 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.790 -5.135 -0.502 12.870 hybrid contribution -0.507 -0.951 0.164 1.090 sum 11.283 -6.086 -0.339 12.825 Atomic orbital electron populations 1.70954 1.07823 1.30467 1.48043 1.26856 0.96399 1.05836 0.92314 0.83077 0.74584 0.72497 0.77236 1.20885 1.21458 1.19568 1.22456 0.95071 0.91212 1.54064 0.91397 1.19560 0.88422 0.95123 0.83402 0.95495 1.47451 1.46898 1.12620 1.29175 1.21545 0.81888 0.84127 0.83851 1.90624 1.52723 1.77766 1.28302 1.22419 0.98094 0.97755 0.99280 1.21161 0.91390 0.94333 0.99737 0.86272 1.19379 0.93667 0.96702 0.93352 1.21048 0.97899 0.97777 0.95419 1.21243 0.91524 0.99676 1.00891 1.21160 0.99386 1.00480 0.92845 1.20915 0.87221 1.04746 0.93913 1.98340 1.32434 1.96896 1.76588 1.20993 0.90070 1.01429 1.00688 0.92552 0.76862 0.87481 0.85489 0.88318 0.83971 0.83235 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.90 13.19 21.45 0.28 -50.61 16 2 C -0.01 -0.66 5.38 84.65 0.46 -0.21 16 3 Si 1.10 46.79 29.90 68.60 2.05 48.84 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.59 -27.74 7.56 25.60 0.19 -27.54 16 8 H 0.07 3.20 5.95 -2.91 -0.02 3.18 16 9 C 0.24 9.90 2.66 44.70 0.12 10.02 16 10 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 11 N -0.71 -30.98 4.92 -442.97 -2.18 -33.16 16 12 C 0.50 20.52 6.90 87.90 0.61 21.13 16 13 O -0.61 -29.17 18.03 -3.02 -0.05 -29.23 16 14 C -0.14 -4.21 6.11 30.59 0.19 -4.03 16 15 C -0.05 -1.54 3.33 -10.48 -0.03 -1.58 16 16 H 0.12 3.21 7.96 -2.39 -0.02 3.19 16 17 C -0.03 -1.01 2.93 -19.87 -0.06 -1.06 16 18 C -0.10 -3.58 7.93 22.27 0.18 -3.41 16 19 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 20 C -0.12 -3.21 9.83 22.29 0.22 -2.99 16 21 C -0.04 -1.15 6.32 22.32 0.14 -1.01 16 22 Cl -0.07 -1.72 28.96 -2.72 -0.08 -1.80 16 23 C -0.11 -3.31 9.37 22.29 0.21 -3.10 16 24 H 0.26 14.20 6.00 -92.71 -0.56 13.65 16 25 H 0.39 18.90 7.41 -92.71 -0.69 18.21 16 26 H 0.11 3.05 7.87 -2.39 -0.02 3.03 16 27 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.10 3.91 6.07 -2.91 -0.02 3.89 16 29 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.14 3.65 7.99 -2.91 -0.02 3.63 16 Total: -1.00 -59.04 276.22 3.16 -55.88 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.70 Total: 27.04 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 2.44 Total: -16.96 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.90 Total: -83.78 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.05 Total: 48.84 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -59.04 3.16 -55.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.630 kcal (2) G-P(sol) polarization free energy of solvation -59.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds