Wall clock time and date at job start Mon Mar 30 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48501 * 109.47569 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46707 * 299.99687 * 3 2 1 6 6 H 1.48506 * 109.47308 * 59.99472 * 3 2 1 7 7 C 1.37882 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99994 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.21235 * 58.07035 * 9 7 2 11 11 N 1.46762 * 110.46414 * 296.25120 * 9 7 2 12 12 C 1.34417 * 111.30037 * 224.21671 * 11 9 7 13 13 O 1.21283 * 124.94355 * 180.27867 * 12 11 9 14 14 C 1.51286 * 110.11517 * 0.02562 * 12 11 9 15 15 C 1.54479 * 110.24468 * 179.97438 * 9 7 2 16 16 H 1.09006 * 110.97141 * 26.38478 * 15 9 7 17 17 C 1.50699 * 110.96893 * 262.62058 * 15 9 7 18 18 C 1.38261 * 119.99513 * 305.89507 * 17 15 9 19 19 C 1.38225 * 120.02222 * 179.76874 * 18 17 15 20 20 C 1.38232 * 120.01611 * 0.50615 * 19 18 17 21 21 C 1.38332 * 119.98676 * 359.74349 * 20 19 18 22 22 Cl 1.73599 * 120.01080 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99262 * 126.16970 * 17 15 9 24 24 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 25 25 H 0.96995 * 124.34962 * 44.06246 * 11 9 7 26 26 H 1.09000 * 110.48290 * 135.17506 * 14 12 11 27 27 H 1.08997 * 110.48854 * 257.81707 * 14 12 11 28 28 H 1.08002 * 119.98593 * 359.97438 * 18 17 15 29 29 H 1.08005 * 119.98727 * 180.25225 * 19 18 17 30 30 H 1.08002 * 120.00499 * 179.72990 * 20 19 18 31 31 H 1.08004 * 120.00672 * 359.95050 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5946 -2.5551 -0.8678 11 7 0.4673 -2.6392 1.2335 12 6 0.5846 -3.8751 1.7489 13 8 0.0377 -4.2606 2.7605 14 6 1.4930 -4.7170 0.8803 15 6 2.2389 -3.6868 0.0005 16 1 3.1894 -3.4036 0.4529 17 6 2.4449 -4.2170 -1.3950 18 6 1.3557 -4.5920 -2.1597 19 6 1.5436 -5.0739 -3.4415 20 6 2.8213 -5.1910 -3.9558 21 6 3.9118 -4.8207 -3.1894 22 17 5.5166 -4.9669 -3.8349 23 6 3.7227 -4.3336 -1.9081 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0650 -1.9303 1.6271 26 1 2.1984 -5.2759 1.4953 27 1 0.9069 -5.3944 0.2593 28 1 0.3575 -4.5053 -1.7564 29 1 0.6921 -5.3629 -4.0398 30 1 2.9682 -5.5716 -4.9558 31 1 4.5737 -4.0440 -1.3094 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:43 Heat of formation + Delta-G solvation = -49.731939 kcal Electronic energy + Delta-G solvation = -17462.306074 eV Core-core repulsion = 14539.800310 eV Total energy + Delta-G solvation = -2922.505764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37292 -39.86859 -37.66077 -37.09763 -34.59930 -33.32901 -31.64427 -30.19472 -29.40949 -25.85701 -23.92035 -23.38736 -21.18077 -21.12630 -18.97231 -18.22534 -17.31417 -16.92428 -16.47792 -16.22646 -15.99837 -15.43749 -14.70311 -14.67842 -14.39262 -14.15974 -13.90416 -13.81773 -13.51030 -12.87819 -12.58609 -12.56375 -12.34617 -12.28144 -12.07275 -11.88593 -11.62889 -11.37147 -10.90823 -10.62272 -9.73910 -9.55664 -9.48893 -8.26494 -6.42045 0.28189 0.41425 1.21786 1.38767 1.44339 1.53285 1.81019 2.36969 2.69583 2.81931 3.25436 3.61376 3.86876 3.98219 4.07319 4.24707 4.29106 4.40861 4.45299 4.63401 4.82735 4.89593 5.00571 5.08443 5.34166 5.43742 5.47559 5.67158 5.72552 5.92993 5.95332 6.25505 6.48064 6.83443 7.32037 7.56669 8.79975 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.007034 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.834436 B = 3979.891192 C = 5110.895811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.259 3.741 10 H 0.033 0.967 11 N -0.697 5.697 12 C 0.493 3.507 13 O -0.616 6.616 14 C -0.133 4.133 15 C -0.050 4.050 16 H 0.093 0.907 17 C -0.048 4.048 18 C -0.119 4.119 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.041 4.041 22 Cl -0.074 7.074 23 C -0.112 4.112 24 H 0.267 0.733 25 H 0.399 0.601 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 -9.247 -9.112 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.157 3.843 10 H 0.051 0.949 11 N -0.346 5.346 12 C 0.280 3.720 13 O -0.501 6.501 14 C -0.172 4.172 15 C -0.069 4.069 16 H 0.111 0.889 17 C -0.049 4.049 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.067 4.067 22 Cl -0.045 7.045 23 C -0.131 4.131 24 H 0.077 0.923 25 H 0.236 0.764 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.545 -9.407 -8.764 14.427 hybrid contribution 0.026 1.648 0.352 1.686 sum 6.571 -7.759 -8.412 13.196 Atomic orbital electron populations 1.69965 1.07117 1.28136 1.49846 1.25748 0.95600 1.02521 0.93403 0.85572 0.79396 0.79658 0.77466 1.18854 1.20616 1.21038 1.21671 0.93695 0.90962 1.51649 0.91377 1.19414 0.88543 0.93016 0.83299 0.94948 1.47197 1.47713 1.12060 1.27605 1.21539 0.81789 0.84218 0.84486 1.90604 1.54170 1.77154 1.28182 1.22410 0.98762 0.97734 0.98322 1.21135 0.99743 0.93964 0.92026 0.88908 1.19497 0.93000 0.97233 0.95122 1.21279 0.98835 0.98495 0.95127 1.21348 0.97432 0.98236 0.94905 1.21273 0.90968 1.00652 1.00747 1.20974 0.86405 1.04461 0.94899 1.98349 1.23257 1.96643 1.86249 1.21000 0.97470 1.00067 0.94553 0.92336 0.76385 0.86940 0.86743 0.85758 0.82503 0.82953 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.97 12.38 21.45 0.27 -47.70 16 2 C 0.03 1.47 5.40 84.66 0.46 1.92 16 3 Si 0.95 40.44 29.54 68.60 2.03 42.46 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -26.37 8.74 25.60 0.22 -26.15 16 8 H 0.07 3.25 7.60 -2.91 -0.02 3.23 16 9 C 0.26 11.34 2.76 44.70 0.12 11.47 16 10 H 0.03 1.54 6.73 -2.39 -0.02 1.52 16 11 N -0.70 -31.96 5.70 -442.98 -2.53 -34.49 16 12 C 0.49 21.24 8.43 87.90 0.74 21.98 16 13 O -0.62 -30.45 18.03 -3.04 -0.05 -30.51 16 14 C -0.13 -4.35 6.34 30.60 0.19 -4.16 16 15 C -0.05 -1.72 2.86 -10.48 -0.03 -1.75 16 16 H 0.09 3.19 7.59 -2.38 -0.02 3.18 16 17 C -0.05 -1.45 4.96 -19.87 -0.10 -1.55 16 18 C -0.12 -3.32 8.03 22.27 0.18 -3.14 16 19 C -0.10 -2.27 10.05 22.27 0.22 -2.05 16 20 C -0.12 -2.59 9.83 22.29 0.22 -2.37 16 21 C -0.04 -1.03 6.32 22.32 0.14 -0.88 16 22 Cl -0.07 -1.68 28.96 -2.72 -0.08 -1.75 16 23 C -0.11 -3.14 9.47 22.29 0.21 -2.92 16 24 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.40 19.89 8.13 -92.71 -0.75 19.14 16 26 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.11 3.30 7.05 -2.39 -0.02 3.28 16 28 H 0.12 3.52 7.35 -2.91 -0.02 3.50 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.14 3.56 7.99 -2.91 -0.02 3.54 16 Total: -1.00 -58.53 284.13 2.63 -55.90 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.41 Total: 25.69 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 2.59 Total: -9.61 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.26 Total: -82.19 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.75 kcal Total: -58.53 2.63 -55.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.168 kcal (2) G-P(sol) polarization free energy of solvation -58.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds