Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47002 * 264.97702 * 3 2 1 5 5 H 1.48495 * 109.47812 * 144.97656 * 3 2 1 6 6 H 1.48504 * 109.47345 * 24.97201 * 3 2 1 7 7 C 1.37872 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00606 * 186.89478 * 7 2 1 9 9 C 1.50701 * 119.99757 * 6.89850 * 7 2 1 10 10 H 1.09005 * 110.21855 * 304.27304 * 9 7 2 11 11 N 1.46766 * 110.24878 * 66.29931 * 9 7 2 12 12 C 1.34413 * 111.30128 * 136.01642 * 11 9 7 13 13 O 1.21287 * 124.93805 * 179.59465 * 12 11 9 14 14 C 1.51279 * 110.12139 * 359.59165 * 12 11 9 15 15 C 1.54487 * 110.24503 * 182.34807 * 9 7 2 16 16 H 1.08998 * 110.97134 * 97.46858 * 15 9 7 17 17 C 1.50697 * 110.96958 * 333.73486 * 15 9 7 18 18 C 1.38264 * 119.99266 * 120.00432 * 17 15 9 19 19 C 1.38217 * 120.02564 * 179.97438 * 18 17 15 20 20 C 1.38233 * 120.01753 * 0.02562 * 19 18 17 21 21 C 1.38336 * 119.98342 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.01206 * 180.02562 * 21 20 19 23 23 C 1.38194 * 119.99421 * 299.72883 * 17 15 9 24 24 H 0.96996 * 120.00340 * 0.02562 * 1 2 3 25 25 H 0.96994 * 124.34602 * 316.03736 * 11 9 7 26 26 H 1.09000 * 110.48972 * 225.07033 * 14 12 11 27 27 H 1.09000 * 110.60087 * 102.47890 * 14 12 11 28 28 H 1.08004 * 119.98111 * 359.97221 * 18 17 15 29 29 H 1.08004 * 119.99276 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.00967 * 179.97438 * 20 19 18 31 31 H 1.08004 * 120.00663 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6027 1.9851 -1.3947 5 1 3.4895 1.4733 0.8035 6 1 1.3975 2.6811 0.5911 7 6 2.0046 -1.1940 0.0005 8 1 3.0787 -1.1973 0.1128 9 6 1.2593 -2.4944 -0.1556 10 1 0.4880 -2.5809 0.6098 11 7 0.6616 -2.5799 -1.4934 12 6 0.8467 -3.7965 -2.0340 13 8 0.4483 -4.1386 -3.1273 14 6 1.6241 -4.6769 -1.0806 15 6 2.2384 -3.6859 -0.0648 16 1 2.2445 -4.1102 0.9392 17 6 3.6271 -3.2759 -0.4825 18 6 4.6786 -3.3896 0.4081 19 6 5.9526 -3.0143 0.0255 20 6 6.1762 -2.5244 -1.2476 21 6 5.1244 -2.4093 -2.1387 22 17 5.4045 -1.7948 -3.7380 23 6 3.8503 -2.7916 -1.7574 24 1 -0.4850 0.8400 -0.0004 25 1 0.1936 -1.8518 -1.9311 26 1 2.4095 -5.2144 -1.6120 27 1 0.9585 -5.3770 -0.5758 28 1 4.5042 -3.7719 1.4030 29 1 6.7737 -3.1037 0.7215 30 1 7.1717 -2.2307 -1.5463 31 1 3.0296 -2.7066 -2.4543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = -27.741893 kcal Electronic energy + Delta-G solvation = -18046.764473 eV Core-core repulsion = 15125.212269 eV Total energy + Delta-G solvation = -2921.552204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.06403 -38.29513 -36.21385 -35.55222 -32.71487 -31.67591 -30.31108 -28.95303 -27.57500 -24.22703 -22.37853 -22.11121 -19.76209 -19.47819 -17.20989 -16.60537 -15.91306 -15.31570 -14.90110 -14.67586 -14.60147 -13.83670 -13.37002 -13.21245 -12.78727 -12.60424 -12.31422 -12.11173 -11.94749 -11.46109 -11.11212 -11.05006 -10.91789 -10.82267 -10.67331 -10.34345 -10.01275 -9.65666 -9.07463 -8.73085 -8.37238 -8.14613 -7.75012 -6.32980 -4.41597 1.58776 1.71615 2.50787 3.18354 3.26077 3.29531 3.50654 4.04097 4.23291 4.54828 4.99993 5.04548 5.16428 5.39293 5.41747 5.46174 5.64010 5.80211 5.83180 5.97073 6.07757 6.25858 6.32715 6.45626 6.64922 6.68186 7.01786 7.15996 7.26593 7.65081 7.76533 8.02035 8.30831 8.71396 9.29201 9.33986 10.73746 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.010383 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.156182 B = 2696.056993 C = 3458.315761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.286 1.286 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.257 3.743 10 H 0.055 0.945 11 N -0.691 5.691 12 C 0.498 3.502 13 O -0.580 6.580 14 C -0.150 4.150 15 C -0.064 4.064 16 H 0.093 0.907 17 C -0.016 4.016 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.034 4.034 22 Cl -0.086 7.086 23 C -0.081 4.081 24 H 0.267 0.733 25 H 0.408 0.592 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 -5.433 1.654 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.156 3.844 10 H 0.072 0.928 11 N -0.343 5.343 12 C 0.283 3.717 13 O -0.463 6.463 14 C -0.191 4.191 15 C -0.083 4.083 16 H 0.111 0.889 17 C -0.016 4.016 18 C -0.135 4.135 19 C -0.132 4.132 20 C -0.147 4.147 21 C -0.061 4.061 22 Cl -0.057 7.057 23 C -0.099 4.099 24 H 0.077 0.923 25 H 0.247 0.753 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.862 -5.502 1.060 10.485 hybrid contribution 0.252 1.560 -0.257 1.601 sum 9.114 -3.942 0.803 9.962 Atomic orbital electron populations 1.69925 1.06001 1.27629 1.48363 1.25050 0.94792 0.99607 0.93466 0.86619 0.80009 0.82910 0.78762 1.20191 1.19567 1.21131 1.21378 0.94360 0.89740 1.51187 0.90836 1.19406 0.90799 0.92465 0.81721 0.92750 1.47194 1.54531 1.12366 1.20185 1.20860 0.80212 0.84330 0.86309 1.90645 1.55737 1.77930 1.21968 1.22415 1.00534 0.98286 0.97828 1.21324 0.91722 0.96844 0.98441 0.88913 1.19432 0.94554 0.95354 0.92295 1.21070 0.92251 1.00760 0.99408 1.20921 0.97164 0.99712 0.95365 1.20858 0.97916 1.02236 0.93696 1.20851 0.95376 1.03107 0.86726 1.98338 1.96561 1.86463 1.24342 1.20932 0.94825 0.97098 0.97078 0.92306 0.75335 0.89332 0.88554 0.85740 0.85807 0.85869 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.78 12.96 55.43 0.72 -22.06 16 2 C 0.08 1.89 5.41 -17.82 -0.10 1.80 16 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -12.50 7.65 -34.44 -0.26 -12.77 16 8 H 0.07 1.76 5.80 -52.49 -0.30 1.45 16 9 C 0.26 5.50 2.97 -68.16 -0.20 5.30 16 10 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 11 N -0.69 -15.23 5.34 -53.87 -0.29 -15.51 16 12 C 0.50 10.57 6.88 -10.86 -0.07 10.49 16 13 O -0.58 -14.13 18.03 5.55 0.10 -14.03 16 14 C -0.15 -2.54 6.10 -26.74 -0.16 -2.70 16 15 C -0.06 -1.11 3.33 -90.13 -0.30 -1.41 16 16 H 0.09 1.37 7.96 -51.93 -0.41 0.96 16 17 C -0.02 -0.28 2.91 -104.63 -0.30 -0.58 16 18 C -0.12 -1.74 9.61 -39.58 -0.38 -2.12 16 19 C -0.11 -1.56 10.04 -39.59 -0.40 -1.96 16 20 C -0.13 -1.91 9.83 -39.55 -0.39 -2.30 16 21 C -0.03 -0.59 6.32 -39.49 -0.25 -0.84 16 22 Cl -0.09 -1.41 28.96 -51.86 -1.50 -2.91 16 23 C -0.08 -1.51 7.67 -39.55 -0.30 -1.81 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.41 9.63 8.68 -40.82 -0.35 9.28 16 26 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 27 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.12 1.55 7.99 -52.48 -0.42 1.13 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.13 2.72 6.07 -52.48 -0.32 2.40 16 LS Contribution 279.96 15.07 4.22 4.22 Total: -1.00 -27.47 279.96 -7.94 -35.42 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.04 Total: 8.75 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.12 Total: -8.89 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.43 Total: -37.58 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.10 Total: -14.03 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.50 Total: -2.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.47 -7.94 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.674 kcal (2) G-P(sol) polarization free energy of solvation -27.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds