Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47002 * 264.97702 * 3 2 1 5 5 H 1.48495 * 109.47812 * 144.97656 * 3 2 1 6 6 H 1.48504 * 109.47345 * 24.97201 * 3 2 1 7 7 C 1.37872 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00606 * 186.89478 * 7 2 1 9 9 C 1.50701 * 119.99757 * 6.89850 * 7 2 1 10 10 H 1.09005 * 110.21855 * 304.27304 * 9 7 2 11 11 N 1.46766 * 110.24878 * 66.29931 * 9 7 2 12 12 C 1.34413 * 111.30128 * 136.01642 * 11 9 7 13 13 O 1.21287 * 124.93805 * 179.59465 * 12 11 9 14 14 C 1.51279 * 110.12139 * 359.59165 * 12 11 9 15 15 C 1.54487 * 110.24503 * 182.34807 * 9 7 2 16 16 H 1.08998 * 110.97134 * 97.46858 * 15 9 7 17 17 C 1.50697 * 110.96958 * 333.73486 * 15 9 7 18 18 C 1.38264 * 119.99266 * 120.00432 * 17 15 9 19 19 C 1.38217 * 120.02564 * 179.97438 * 18 17 15 20 20 C 1.38233 * 120.01753 * 0.02562 * 19 18 17 21 21 C 1.38336 * 119.98342 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.01206 * 180.02562 * 21 20 19 23 23 C 1.38194 * 119.99421 * 299.72883 * 17 15 9 24 24 H 0.96996 * 120.00340 * 0.02562 * 1 2 3 25 25 H 0.96994 * 124.34602 * 316.03736 * 11 9 7 26 26 H 1.09000 * 110.48972 * 225.07033 * 14 12 11 27 27 H 1.09000 * 110.60087 * 102.47890 * 14 12 11 28 28 H 1.08004 * 119.98111 * 359.97221 * 18 17 15 29 29 H 1.08004 * 119.99276 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.00967 * 179.97438 * 20 19 18 31 31 H 1.08004 * 120.00663 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6027 1.9851 -1.3947 5 1 3.4895 1.4733 0.8035 6 1 1.3975 2.6811 0.5911 7 6 2.0046 -1.1940 0.0005 8 1 3.0787 -1.1973 0.1128 9 6 1.2593 -2.4944 -0.1556 10 1 0.4880 -2.5809 0.6098 11 7 0.6616 -2.5799 -1.4934 12 6 0.8467 -3.7965 -2.0340 13 8 0.4483 -4.1386 -3.1273 14 6 1.6241 -4.6769 -1.0806 15 6 2.2384 -3.6859 -0.0648 16 1 2.2445 -4.1102 0.9392 17 6 3.6271 -3.2759 -0.4825 18 6 4.6786 -3.3896 0.4081 19 6 5.9526 -3.0143 0.0255 20 6 6.1762 -2.5244 -1.2476 21 6 5.1244 -2.4093 -2.1387 22 17 5.4045 -1.7948 -3.7380 23 6 3.8503 -2.7916 -1.7574 24 1 -0.4850 0.8400 -0.0004 25 1 0.1936 -1.8518 -1.9311 26 1 2.4095 -5.2144 -1.6120 27 1 0.9585 -5.3770 -0.5758 28 1 4.5042 -3.7719 1.4030 29 1 6.7737 -3.1037 0.7215 30 1 7.1717 -2.2307 -1.5463 31 1 3.0296 -2.7066 -2.4543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = -44.046070 kcal Electronic energy + Delta-G solvation = -18047.471476 eV Core-core repulsion = 15125.212269 eV Total energy + Delta-G solvation = -2922.259206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55048 -39.69689 -37.63871 -37.07624 -34.52151 -33.16647 -31.51275 -30.33788 -29.27989 -25.85578 -23.79890 -23.34045 -21.24410 -21.04563 -18.90330 -18.02597 -17.61484 -16.65041 -16.51724 -16.19197 -15.98994 -15.44298 -14.73262 -14.58884 -14.29766 -14.22739 -13.85144 -13.74483 -13.29587 -12.90549 -12.71239 -12.60619 -12.23305 -12.21182 -12.11065 -11.89043 -11.50572 -11.32347 -10.85194 -10.57765 -9.61750 -9.54103 -9.38939 -8.22814 -6.32886 0.37721 0.50363 1.25470 1.36713 1.43165 1.47687 1.83521 2.37832 2.76495 2.85836 3.28573 3.75913 3.81629 4.03926 4.10750 4.24135 4.40641 4.50972 4.58838 4.73328 4.83146 4.96345 5.03209 5.17673 5.37264 5.48019 5.57745 5.73816 5.78900 5.95425 6.07692 6.26394 6.53433 6.89666 7.39340 7.56711 8.83639 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.010383 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.156182 B = 2696.056993 C = 3458.315761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.934 3.066 4 H -0.288 1.288 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.253 3.747 10 H 0.036 0.964 11 N -0.698 5.698 12 C 0.491 3.509 13 O -0.619 6.619 14 C -0.137 4.137 15 C -0.052 4.052 16 H 0.128 0.872 17 C -0.034 4.034 18 C -0.113 4.113 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.053 4.053 22 Cl -0.092 7.092 23 C -0.105 4.105 24 H 0.264 0.736 25 H 0.394 0.606 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -6.502 3.538 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.167 4.167 3 Si 0.761 3.239 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.152 3.848 10 H 0.054 0.946 11 N -0.346 5.346 12 C 0.278 3.722 13 O -0.504 6.504 14 C -0.176 4.176 15 C -0.071 4.071 16 H 0.145 0.855 17 C -0.035 4.035 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.079 4.079 22 Cl -0.063 7.063 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.230 0.770 26 H 0.120 0.880 27 H 0.145 0.855 28 H 0.173 0.827 29 H 0.182 0.818 30 H 0.164 0.836 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.200 -6.578 2.970 13.324 hybrid contribution -0.417 1.889 -0.864 2.118 sum 10.783 -4.689 2.106 11.945 Atomic orbital electron populations 1.70007 1.06915 1.27720 1.50284 1.25600 0.95267 1.01868 0.94015 0.85930 0.79372 0.80687 0.77930 1.21424 1.18725 1.21234 1.21622 0.94413 0.90540 1.49265 0.90777 1.19392 0.91101 0.93672 0.80664 0.94637 1.47251 1.54445 1.12437 1.20476 1.21599 0.79737 0.84520 0.86305 1.90610 1.57375 1.78598 1.23831 1.22413 1.00655 0.97814 0.96759 1.21309 0.90798 0.94740 1.00279 0.85451 1.19511 0.95215 0.96458 0.92268 1.21452 0.91874 0.99602 1.00104 1.21407 0.97949 0.97541 0.95259 1.21227 0.98228 1.01342 0.93769 1.21062 0.95747 1.03961 0.87141 1.98329 1.96508 1.86577 1.24899 1.20800 0.94647 0.99389 0.97598 0.92706 0.77033 0.87983 0.85542 0.82655 0.81804 0.83579 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.89 12.96 21.45 0.28 -47.61 16 2 C 0.03 1.72 5.41 84.65 0.46 2.18 16 3 Si 0.93 41.15 29.54 68.60 2.03 43.18 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.52 -24.35 7.65 25.60 0.20 -24.15 16 8 H 0.07 3.43 5.80 -2.91 -0.02 3.42 16 9 C 0.25 10.69 2.97 44.70 0.13 10.83 16 10 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 11 N -0.70 -31.38 5.34 -442.95 -2.37 -33.75 16 12 C 0.49 21.00 6.88 87.90 0.61 21.61 16 13 O -0.62 -30.84 18.03 -3.05 -0.06 -30.89 16 14 C -0.14 -4.34 6.10 30.59 0.19 -4.16 16 15 C -0.05 -1.68 3.33 -10.48 -0.03 -1.72 16 16 H 0.13 3.20 7.96 -2.39 -0.02 3.18 16 17 C -0.03 -1.10 2.91 -19.87 -0.06 -1.15 16 18 C -0.11 -2.85 9.61 22.27 0.21 -2.63 16 19 C -0.10 -2.36 10.04 22.26 0.22 -2.13 16 20 C -0.13 -3.36 9.83 22.29 0.22 -3.14 16 21 C -0.05 -1.74 6.32 22.33 0.14 -1.60 16 22 Cl -0.09 -2.99 28.96 -2.72 -0.08 -3.07 16 23 C -0.11 -3.86 7.67 22.29 0.17 -3.69 16 24 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 25 H 0.39 19.45 8.68 -92.71 -0.81 18.64 16 26 H 0.10 3.02 7.86 -2.39 -0.02 3.00 16 27 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.16 2.95 7.99 -2.91 -0.02 2.93 16 29 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.10 4.19 6.07 -2.91 -0.02 4.17 16 Total: -1.00 -60.75 279.96 2.62 -58.13 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.36 Total: 23.79 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 2.45 Total: -9.76 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.09 Total: -81.36 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -0.08 Total: -3.07 kcal Total: -60.75 2.62 -58.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds