Wall clock time and date at job start Mon Mar 30 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47235 * 2 1 4 4 C 1.50700 * 109.47407 * 120.00538 * 2 1 3 5 5 S 1.71037 * 125.38276 * 300.02488 * 4 2 1 6 6 C 1.76083 * 90.39067 * 179.97438 * 5 4 2 7 7 C 1.39915 * 125.55156 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00327 * 354.18323 * 7 6 5 9 9 C 1.40248 * 119.99646 * 174.17812 * 7 6 5 10 10 N 1.30701 * 120.00144 * 6.08586 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 186.07936 * 9 7 6 12 12 H 1.48504 * 109.46964 * 94.98034 * 11 9 7 13 13 H 1.48496 * 109.47516 * 214.98529 * 11 9 7 14 14 H 1.48497 * 109.46912 * 334.98794 * 11 9 7 15 15 N 1.31865 * 108.89229 * 0.02562 * 6 5 4 16 16 C 1.30457 * 115.68506 * 359.97438 * 15 6 5 17 17 C 1.50705 * 122.09649 * 179.97438 * 16 15 6 18 18 F 1.39896 * 109.47129 * 5.02677 * 17 16 15 19 19 F 1.39897 * 109.46840 * 125.02922 * 17 16 15 20 20 F 1.39902 * 109.46935 * 245.02847 * 17 16 15 21 21 H 1.09007 * 109.46986 * 299.99425 * 1 2 3 22 22 H 1.08997 * 109.47345 * 59.99585 * 1 2 3 23 23 H 1.09003 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46524 * 240.00309 * 2 1 3 25 25 H 1.08999 * 109.47556 * 300.00918 * 3 2 1 26 26 H 1.09007 * 109.47112 * 60.00669 * 3 2 1 27 27 H 1.09004 * 109.47578 * 179.97438 * 3 2 1 28 28 H 0.96998 * 120.00071 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 16 1.7047 -0.2482 2.8442 6 6 2.6613 -1.6017 3.4388 7 6 2.8806 -1.9136 4.7850 8 1 2.5255 -1.2485 5.5582 9 6 3.5614 -3.0901 5.1302 10 7 4.0947 -3.8343 4.1974 11 14 3.7063 -3.5936 6.9233 12 1 2.6173 -4.5456 7.2596 13 1 5.0212 -4.2454 7.1498 14 1 3.5953 -2.3899 7.7858 15 7 3.1374 -2.2733 2.4087 16 6 2.8113 -1.8114 1.2330 17 6 3.2765 -2.4665 -0.0420 18 9 3.9683 -3.6433 0.2639 19 9 2.1691 -2.7706 -0.8409 20 9 4.1240 -1.5934 -0.7325 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 4.5653 -4.6482 4.4362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261354953.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:27 Heat of formation + Delta-G solvation = -153.606061 kcal Electronic energy + Delta-G solvation = -18506.575776 eV Core-core repulsion = 15039.752657 eV Total energy + Delta-G solvation = -3466.823118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.10422 -48.61698 -48.54738 -39.91183 -36.70815 -35.38788 -31.41901 -28.58297 -27.97959 -27.22513 -24.12253 -22.06386 -21.48746 -19.61171 -19.48938 -18.63485 -18.31835 -17.46115 -16.70164 -15.62334 -15.55181 -15.40004 -15.05909 -15.02784 -14.85662 -14.73946 -14.66923 -14.53341 -13.83604 -13.68432 -13.23606 -13.08214 -12.92045 -12.81852 -12.30922 -12.12876 -12.08483 -11.84101 -11.43890 -11.31096 -9.80491 -9.71921 -9.65737 -8.63336 -6.67922 0.31376 1.11208 1.32095 1.44432 1.46746 1.61546 1.89100 2.16358 2.18444 2.92580 3.06646 3.31239 3.58302 3.97261 4.10595 4.33217 4.65094 4.72148 4.80325 4.95952 4.96506 5.07429 5.15582 5.30408 5.41168 5.41774 5.94397 6.16855 6.49118 7.69398 8.19338 Molecular weight = 265.04amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.008227 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.761209 B = 3402.811085 C = 4249.692759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.133 4.133 4 C -0.316 4.316 5 S -0.002 6.002 6 C 0.186 3.814 7 C -0.396 4.396 8 H 0.116 0.884 9 C 0.025 3.975 10 N -0.742 5.742 11 Si 1.005 2.995 12 H -0.260 1.260 13 H -0.267 1.267 14 H -0.243 1.243 15 N -0.550 5.550 16 C 0.005 3.995 17 C 0.540 3.460 18 F -0.179 7.179 19 F -0.176 7.176 20 F -0.178 7.178 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 4.226 -2.352 5.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.190 4.190 4 C -0.443 4.443 5 S 0.258 5.742 6 C -0.064 4.064 7 C -0.439 4.439 8 H 0.134 0.866 9 C -0.202 4.202 10 N -0.364 5.364 11 Si 0.823 3.177 12 H -0.185 1.185 13 H -0.192 1.192 14 H -0.166 1.166 15 N -0.270 5.270 16 C -0.136 4.136 17 C 0.483 3.517 18 F -0.160 7.160 19 F -0.157 7.157 20 F -0.160 7.160 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.382 4.437 -1.916 5.899 hybrid contribution 0.701 -1.091 -0.573 1.417 sum -2.681 3.346 -2.489 4.957 Atomic orbital electron populations 1.21784 0.93405 1.01374 1.02389 1.19452 0.96439 0.95681 0.91430 1.21792 1.00431 0.94396 1.02421 1.24105 1.15076 1.05144 1.00013 1.82722 1.56523 1.36899 0.98036 1.24349 0.94367 0.90738 0.96957 1.19610 1.28809 1.05848 0.89670 0.86610 1.27246 0.92788 0.94983 1.05232 1.70093 1.18679 1.10018 1.37575 0.84837 0.78873 0.79825 0.74147 1.18501 1.19196 1.16609 1.67276 1.31354 1.32557 0.95817 1.20074 1.03162 0.97032 0.93371 1.17680 0.74619 0.75961 0.83442 1.93151 1.80134 1.49518 1.93213 1.93130 1.53484 1.93338 1.75755 1.93138 1.72002 1.69593 1.81243 0.92802 0.90070 0.93950 0.91622 0.90049 0.92785 0.93945 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.10 71.98 0.65 -3.34 15 2 C -0.01 -0.33 2.94 -11.54 -0.03 -0.36 15 3 C -0.13 -4.02 9.10 71.98 0.65 -3.37 15 4 C -0.32 -13.97 4.96 24.91 0.12 -13.84 15 5 S 0.00 -0.11 22.58 -56.49 -1.28 -1.38 15 6 C 0.19 9.79 7.07 85.09 0.60 10.39 15 7 C -0.40 -19.50 9.39 23.16 0.22 -19.29 15 8 H 0.12 5.08 7.86 -2.91 -0.02 5.05 15 9 C 0.02 1.15 5.49 85.35 0.47 1.62 15 10 N -0.74 -38.33 11.90 21.88 0.26 -38.07 15 11 Si 1.01 34.07 29.57 68.60 2.03 36.10 15 12 H -0.26 -8.59 7.11 99.48 0.71 -7.88 15 13 H -0.27 -8.80 7.11 99.48 0.71 -8.09 15 14 H -0.24 -7.64 7.11 99.48 0.71 -6.93 15 15 N -0.55 -30.69 8.33 -183.43 -1.53 -32.22 15 16 C 0.00 0.24 6.13 41.99 0.26 0.50 15 17 C 0.54 24.60 2.81 71.24 0.20 24.80 15 18 F -0.18 -8.72 16.97 44.97 0.76 -7.95 15 19 F -0.18 -7.28 15.90 44.97 0.72 -6.57 15 20 F -0.18 -7.52 16.78 44.97 0.75 -6.77 15 21 H 0.05 1.62 7.96 -2.38 -0.02 1.60 15 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.07 2.35 5.83 -2.38 -0.01 2.34 15 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.05 1.63 7.96 -2.38 -0.02 1.61 15 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 28 H 0.29 13.54 8.29 -92.71 -0.77 12.77 15 Total: -1.00 -58.83 270.81 6.06 -52.77 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.20 Total: 6.99 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 3.14 Total: -2.89 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.27 Total: -70.29 kcal Atomic # 9 Polarization: -23.52 SS G_CDS: 2.23 Total: -21.29 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.10 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.28 Total: -1.38 kcal Total: -58.83 6.06 -52.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354953.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.838 kcal (2) G-P(sol) polarization free energy of solvation -58.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds