Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75497 * 124.70743 * 2 1 4 4 C 1.70450 * 92.45175 * 179.80635 * 3 2 1 5 5 C 1.36089 * 110.80749 * 0.34616 * 4 3 2 6 6 C 1.47112 * 123.46833 * 179.86167 * 5 4 3 7 7 O 1.21667 * 119.99699 * 131.83804 * 6 5 4 8 8 N 1.34771 * 119.99965 * 311.55540 * 6 5 4 9 9 C 1.36974 * 120.00216 * 185.00854 * 8 6 5 10 10 H 1.07999 * 120.00215 * 133.35269 * 9 8 6 11 11 C 1.38970 * 120.00055 * 313.35596 * 9 8 6 12 12 N 1.31420 * 119.99999 * 168.20275 * 11 9 8 13 13 Si 1.86806 * 119.99916 * 348.20493 * 11 9 8 14 14 H 1.48500 * 109.46920 * 95.76118 * 13 11 9 15 15 H 1.48502 * 109.46577 * 215.76044 * 13 11 9 16 16 H 1.48496 * 109.47061 * 335.76034 * 13 11 9 17 17 C 1.46502 * 119.99933 * 5.01528 * 8 6 5 18 18 C 1.52999 * 117.49840 * 183.96738 * 17 8 6 19 19 C 1.53003 * 60.00101 * 252.51293 * 18 17 8 20 20 C 1.32760 * 124.69904 * 180.02562 * 2 1 3 21 21 C 1.50704 * 123.45668 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.46858 * 270.00686 * 1 2 3 23 23 H 1.09001 * 109.46598 * 29.99379 * 1 2 3 24 24 H 1.08992 * 109.47373 * 149.99838 * 1 2 3 25 25 H 1.08004 * 124.59435 * 180.23947 * 4 3 2 26 26 H 0.96999 * 120.00204 * 180.02562 * 12 11 9 27 27 H 1.09001 * 115.55210 * 329.67731 * 17 8 6 28 28 H 1.09001 * 117.49818 * 0.02562 * 18 17 8 29 29 H 1.09004 * 117.50179 * 145.01839 * 18 17 8 30 30 H 1.08998 * 117.49647 * 252.51166 * 19 18 17 31 31 H 1.08999 * 117.51709 * 107.48372 * 19 18 17 32 32 H 1.09008 * 109.46694 * 270.00113 * 21 20 2 33 33 H 1.08997 * 109.47220 * 29.99865 * 21 20 2 34 34 H 1.09001 * 109.47329 * 150.00309 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5063 1.4427 0.0000 4 6 3.9477 0.5330 0.0058 5 6 3.6777 -0.8008 -0.0001 6 6 4.7194 -1.8395 -0.0001 7 8 4.6511 -2.7696 0.7813 8 7 5.7464 -1.7638 -0.8695 9 6 6.6603 -2.7817 -0.9404 10 1 6.9594 -3.1729 -1.9015 11 6 7.2024 -3.3111 0.2246 12 7 7.8934 -4.4281 0.1793 13 14 6.9489 -2.4351 1.8549 14 1 5.7890 -3.0335 2.5632 15 1 8.1681 -2.5812 2.6900 16 1 6.6882 -0.9943 1.6073 17 6 5.8855 -0.5928 -1.7388 18 6 7.0174 -0.6075 -2.7681 19 6 7.1151 0.2951 -1.5365 20 6 2.2628 -1.0915 -0.0005 21 6 1.7021 -2.4903 -0.0006 22 1 -0.3633 0.0001 1.0277 23 1 -0.3632 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 4.9408 0.9576 0.0114 26 1 8.2715 -4.7978 0.9924 27 1 4.9532 -0.1043 -2.0223 28 1 7.6583 -1.4886 -2.7988 29 1 6.8299 -0.1289 -3.7293 30 1 6.9918 1.3675 -1.6874 31 1 7.8203 0.0081 -0.7565 32 1 1.5672 -2.8277 1.0272 33 1 0.7406 -2.4963 -0.5140 34 1 2.3928 -3.1587 -0.5147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271391315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = 32.153451 kcal Electronic energy + Delta-G solvation = -18457.361262 eV Core-core repulsion = 15676.283116 eV Total energy + Delta-G solvation = -2781.078146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56643 -37.36083 -36.26244 -32.95528 -32.32472 -31.23370 -29.18614 -26.10092 -24.74287 -23.30721 -21.93420 -21.09385 -19.56721 -18.28480 -17.04382 -16.82801 -16.04223 -15.40111 -14.62265 -14.20821 -13.93790 -13.73210 -13.39586 -13.25841 -12.67789 -12.64157 -12.46973 -12.21955 -11.91750 -11.57560 -11.51659 -11.33843 -11.11799 -10.73121 -10.62039 -10.30589 -10.05944 -10.02311 -9.63098 -8.76804 -8.49331 -8.31610 -7.95486 -7.50049 -6.21828 -4.07255 1.20862 1.82739 2.21134 2.54590 3.37677 3.48057 3.69147 3.87849 4.34370 4.47855 4.65580 4.94565 5.13889 5.24149 5.29717 5.47040 5.50867 5.54174 5.67185 5.68310 5.72691 5.76787 5.92668 6.06545 6.13743 6.22652 6.26409 6.35783 6.57673 6.65440 6.84170 6.86003 7.78715 7.97036 8.70400 8.82074 9.34959 9.73499 10.80908 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.008473 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.031989 B = 3303.674549 C = 3867.447522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.212 4.212 3 S 0.132 5.868 4 C -0.227 4.227 5 C -0.113 4.113 6 C 0.511 3.489 7 O -0.535 6.535 8 N -0.425 5.425 9 C -0.342 4.342 10 H 0.099 0.901 11 C 0.087 3.913 12 N -0.868 5.868 13 Si 0.930 3.070 14 H -0.258 1.258 15 H -0.316 1.316 16 H -0.285 1.285 17 C 0.062 3.938 18 C -0.171 4.171 19 C -0.201 4.201 20 C -0.060 4.060 21 C -0.089 4.089 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.168 0.832 26 H 0.273 0.727 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 11.949 -2.631 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.328 4.328 3 S 0.398 5.602 4 C -0.364 4.364 5 C -0.130 4.130 6 C 0.301 3.699 7 O -0.419 6.419 8 N -0.144 5.144 9 C -0.468 4.468 10 H 0.116 0.884 11 C -0.122 4.122 12 N -0.502 5.502 13 Si 0.763 3.237 14 H -0.184 1.184 15 H -0.246 1.246 16 H -0.212 1.212 17 C -0.043 4.043 18 C -0.209 4.209 19 C -0.240 4.240 20 C -0.072 4.072 21 C -0.148 4.148 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.185 0.815 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.236 12.874 -2.189 17.227 hybrid contribution 0.643 -0.977 0.794 1.414 sum -10.594 11.897 -1.395 15.991 Atomic orbital electron populations 1.20270 0.87971 1.02729 1.02383 1.23958 0.99783 0.95510 1.13582 1.82589 0.94900 1.09225 1.73443 1.25536 1.03684 0.97162 1.10029 1.20497 0.94167 0.93313 1.05060 1.17655 0.81239 0.85858 0.85182 1.90566 1.76331 1.35286 1.39668 1.43027 1.22113 1.15768 1.33489 1.18805 1.20986 1.11473 0.95530 0.88361 1.25452 0.92441 0.94558 0.99785 1.69695 1.33083 1.17504 1.29953 0.85942 0.75765 0.79259 0.82692 1.18405 1.24631 1.21151 1.21909 0.92958 0.91257 0.98211 1.23142 1.02554 1.02664 0.92513 1.23292 1.03119 0.95998 1.01547 1.19729 0.90627 0.96353 1.00500 1.20460 1.00066 0.91579 1.02709 0.91131 0.91711 0.90610 0.81495 0.91673 0.86861 0.87012 0.89426 0.89511 0.88531 0.90840 0.91942 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.04 36.01 0.36 -0.42 16 2 C -0.21 -3.06 6.44 -36.18 -0.23 -3.29 16 3 S 0.13 1.79 23.00 -107.50 -2.47 -0.68 16 4 C -0.23 -3.92 8.64 29.96 0.26 -3.66 16 5 C -0.11 -2.30 5.10 -104.63 -0.53 -2.83 16 6 C 0.51 12.73 5.07 -12.66 -0.06 12.67 16 7 O -0.53 -15.17 11.51 5.22 0.06 -15.11 16 8 N -0.43 -10.45 2.47 -109.04 -0.27 -10.72 16 9 C -0.34 -9.61 8.53 -14.98 -0.13 -9.73 16 10 H 0.10 2.87 7.24 -52.49 -0.38 2.49 16 11 C 0.09 2.57 5.05 -17.46 -0.09 2.48 16 12 N -0.87 -26.48 13.96 55.50 0.77 -25.70 16 13 Si 0.93 25.59 24.39 -169.99 -4.15 21.44 16 14 H -0.26 -7.48 6.36 56.52 0.36 -7.12 16 15 H -0.32 -8.47 7.11 56.52 0.40 -8.07 16 16 H -0.29 -7.63 6.98 56.52 0.39 -7.23 16 17 C 0.06 1.22 4.68 -67.93 -0.32 0.90 16 18 C -0.17 -3.01 9.81 -26.73 -0.26 -3.27 16 19 C -0.20 -3.52 9.96 -26.73 -0.27 -3.78 16 20 C -0.06 -1.06 6.00 -104.06 -0.62 -1.69 16 21 C -0.09 -1.47 9.33 36.01 0.34 -1.13 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.73 6.66 -51.93 -0.35 0.38 16 25 H 0.17 2.81 6.91 -52.48 -0.36 2.45 16 26 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 27 H 0.11 2.00 6.31 -51.93 -0.33 1.67 16 28 H 0.11 2.23 6.61 -51.93 -0.34 1.89 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.06 0.80 6.64 -51.93 -0.34 0.46 16 34 H 0.07 1.43 7.51 -51.93 -0.39 1.04 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -32.92 289.45 -7.47 -40.39 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.21 Total: -0.21 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.56 Total: -13.77 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.51 Total: -36.43 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.06 Total: -15.11 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.15 Total: 21.44 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.47 Total: -0.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.92 -7.47 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271391315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.544 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds